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protocols::simple_filters::PackStatFilter Class Reference

#include <PackStatFilter.hh>

Inheritance diagram for protocols::simple_filters::PackStatFilter:
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Collaboration diagram for protocols::simple_filters::PackStatFilter:
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Public Types

typedef protocols::filters::Filter Super
 
typedef protocols::filters::Filter Filter
 
typedef
protocols::filters::FilterOP 
FilterOP
 
typedef core::Real Real
 
typedef core::pose::Pose Pose
 
typedef utility::tag::TagPtr TagPtr
 
typedef
protocols::filters::Filters_map 
Filters_map
 
typedef protocols::moves::DataMap DataMap
 
typedef
protocols::moves::Movers_map 
Movers_map
 

Public Member Functions

 PackStatFilter ()
 default constructor More...
 
 PackStatFilter (Real const &ss)
 constructor with arguments More...
 
 PackStatFilter (PackStatFilter const &rval)
 copy constructor More...
 
virtual ~PackStatFilter ()
 
virtual filters::FilterOP clone () const
 make clone More...
 
virtual filters::FilterOP fresh_instance () const
 make fresh instance More...
 
void filtered_score (Real const &ss)
 set filtered secondary structure More...
 
virtual std::string name () const
 get name of this filter More...
 
virtual void parse_my_tag (TagPtr const tag, DataMap &, filters::Filters_map const &, Movers_map const &, Pose const &)
 parse xml More...
 
virtual bool apply (Pose const &pose) const
 returns true if the given pose passes the filter, false otherwise. In this case, the test is whether the give pose is the topology we want. More...
 
virtual Real report_sm (Pose const &pose) const
 used to report filter internals through a score or silent file More...
 
Real compute (Pose const &pose) const
 calc packstat score More...
 
- Public Member Functions inherited from protocols::filters::Filter
 Filter ()
 
 Filter (std::string const &)
 
 Filter (Filter const &)
 
virtual ~Filter ()
 
virtual void report (std::ostream &, core::pose::Pose const &) const
 
virtual std::string get_type () const
 
std::string get_user_defined_name () const
 
void set_user_defined_name (std::string const &name)
 
virtual void clear ()
 used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
 
virtual void apply (core::io::serialization::PipeMap &pmap)
 
virtual void score (core::io::serialization::PipeMap &pmap)
 
virtual core::Real score (core::pose::Pose &pose)
 
virtual void parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)
 

Public Attributes

core::Size chain_
 determine which chain to evaluate, 0 is all More...
 
core::Size repeats_
 how many times to repeat evaluation More...
 

Private Attributes

Real filtered_score_
 

Additional Inherited Members

- Protected Attributes inherited from protocols::filters::Filter
std::string scorename_
 

Member Typedef Documentation

Constructor & Destructor Documentation

protocols::simple_filters::PackStatFilter::PackStatFilter ( )

default constructor

Referenced by clone(), and fresh_instance().

protocols::simple_filters::PackStatFilter::PackStatFilter ( Real const &  ss)

constructor with arguments

protocols::simple_filters::PackStatFilter::PackStatFilter ( PackStatFilter const &  rval)

copy constructor

virtual protocols::simple_filters::PackStatFilter::~PackStatFilter ( )
inlinevirtual

Member Function Documentation

bool protocols::simple_filters::PackStatFilter::apply ( Pose const &  pose) const
virtual

returns true if the given pose passes the filter, false otherwise. In this case, the test is whether the give pose is the topology we want.

Implements protocols::filters::Filter.

References compute(), filtered_score_, protocols::filters::Filter::score(), and protocols::simple_filters::tr().

virtual filters::FilterOP protocols::simple_filters::PackStatFilter::clone ( ) const
inlinevirtual

make clone

Implements protocols::filters::Filter.

References PackStatFilter().

PackStatFilter::Real protocols::simple_filters::PackStatFilter::compute ( Pose const &  pose) const
void protocols::simple_filters::PackStatFilter::filtered_score ( Real const &  ss)

set filtered secondary structure

References filtered_score_, and protocols::filters::Filter::score().

virtual filters::FilterOP protocols::simple_filters::PackStatFilter::fresh_instance ( ) const
inlinevirtual

make fresh instance

Implements protocols::filters::Filter.

References PackStatFilter().

virtual std::string protocols::simple_filters::PackStatFilter::name ( ) const
inlinevirtual

get name of this filter

Reimplemented from protocols::filters::Filter.

void protocols::simple_filters::PackStatFilter::parse_my_tag ( TagPtr const  tag,
DataMap ,
filters::Filters_map const &  ,
Movers_map const &  ,
Pose const &   
)
virtual
PackStatFilter::Real protocols::simple_filters::PackStatFilter::report_sm ( Pose const &  ) const
virtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute().

Member Data Documentation

core::Size protocols::simple_filters::PackStatFilter::chain_

determine which chain to evaluate, 0 is all

Referenced by compute(), and parse_my_tag().

Real protocols::simple_filters::PackStatFilter::filtered_score_
private

Referenced by apply(), filtered_score(), and parse_my_tag().

core::Size protocols::simple_filters::PackStatFilter::repeats_

how many times to repeat evaluation

Referenced by compute(), and parse_my_tag().


The documentation for this class was generated from the following files: