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Public Member Functions | Private Attributes | List of all members
protocols::simple_filters::ResidueBurialFilter Class Reference

#include <ResidueBurialFilter.hh>

Inheritance diagram for protocols::simple_filters::ResidueBurialFilter:
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Public Member Functions

 ResidueBurialFilter ()
 
 ResidueBurialFilter (core::Size const target_residue, core::Size const neighbors, core::Real const distance_threshold)
 
bool apply (core::pose::Pose const &pose) const
 Returns true if the given pose passes the filter, false otherwise. More...
 
void report (std::ostream &out, core::pose::Pose const &pose) const
 
core::Real report_sm (core::pose::Pose const &pose) const
 used to report filter internals through a score or silent file More...
 
core::Size compute (core::pose::Pose const &pose) const
 
filters::FilterOP clone () const
 
filters::FilterOP fresh_instance () const
 
core::pack::task::TaskFactoryOP task_factory () const
 
void task_factory (core::pack::task::TaskFactoryOP tf)
 
virtual ~ResidueBurialFilter ()
 
void parse_my_tag (utility::tag::TagPtr const tag, protocols::moves::DataMap &, filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)
 
core::Real residue_fraction_buried () const
 
void residue_fraction_buried (core::Real const r)
 
- Public Member Functions inherited from protocols::filters::Filter
 Filter ()
 
 Filter (std::string const &)
 
 Filter (Filter const &)
 
virtual ~Filter ()
 
virtual std::string get_type () const
 
std::string get_user_defined_name () const
 
void set_user_defined_name (std::string const &name)
 
virtual void clear ()
 used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
 
virtual void apply (core::io::serialization::PipeMap &pmap)
 
virtual void score (core::io::serialization::PipeMap &pmap)
 
virtual core::Real score (core::pose::Pose &pose)
 
virtual void parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)
 
virtual std::string name () const
 

Private Attributes

core::Size target_residue_
 
core::Size neighbors_
 
core::Real distance_threshold_
 
core::pack::task::TaskFactoryOP task_factory_
 
core::Real residue_fraction_buried_
 used to determine which residues to check for burial dynamically. All designable residues will be checked, and if any of them is buried, returns true More...
 

Additional Inherited Members

- Protected Attributes inherited from protocols::filters::Filter
std::string scorename_
 

Constructor & Destructor Documentation

protocols::simple_filters::ResidueBurialFilter::ResidueBurialFilter ( )

Referenced by clone(), and fresh_instance().

protocols::simple_filters::ResidueBurialFilter::ResidueBurialFilter ( core::Size const  target_residue,
core::Size const  neighbors,
core::Real const  distance_threshold 
)
protocols::simple_filters::ResidueBurialFilter::~ResidueBurialFilter ( )
virtual

Member Function Documentation

bool protocols::simple_filters::ResidueBurialFilter::apply ( core::pose::Pose const &  pose) const
virtual
filters::FilterOP protocols::simple_filters::ResidueBurialFilter::clone ( ) const
virtual
core::Size protocols::simple_filters::ResidueBurialFilter::compute ( core::pose::Pose const &  pose) const
filters::FilterOP protocols::simple_filters::ResidueBurialFilter::fresh_instance ( ) const
virtual
void protocols::simple_filters::ResidueBurialFilter::parse_my_tag ( utility::tag::TagPtr const  tag,
protocols::moves::DataMap data,
filters::Filters_map const &  ,
protocols::moves::Movers_map const &  ,
core::pose::Pose const &  pose 
)
virtual

Reimplemented from protocols::filters::Filter.

References core::pose::get_resnum(), and core::TR().

void protocols::simple_filters::ResidueBurialFilter::report ( std::ostream &  out,
core::pose::Pose const &  pose 
) const
virtual
core::Real protocols::simple_filters::ResidueBurialFilter::report_sm ( core::pose::Pose const &  ) const
virtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute(), and task_factory().

core::Real protocols::simple_filters::ResidueBurialFilter::residue_fraction_buried ( ) const
inline

References residue_fraction_buried_.

Referenced by apply().

void protocols::simple_filters::ResidueBurialFilter::residue_fraction_buried ( core::Real const  r)
inline
core::pack::task::TaskFactoryOP protocols::simple_filters::ResidueBurialFilter::task_factory ( ) const

References task_factory_.

Referenced by apply(), report(), and report_sm().

void protocols::simple_filters::ResidueBurialFilter::task_factory ( core::pack::task::TaskFactoryOP  tf)

References task_factory_.

Member Data Documentation

core::Real protocols::simple_filters::ResidueBurialFilter::distance_threshold_
private

Referenced by apply(), and compute().

core::Size protocols::simple_filters::ResidueBurialFilter::neighbors_
private

Referenced by apply().

core::Real protocols::simple_filters::ResidueBurialFilter::residue_fraction_buried_
private

used to determine which residues to check for burial dynamically. All designable residues will be checked, and if any of them is buried, returns true

Referenced by residue_fraction_buried().

core::Size protocols::simple_filters::ResidueBurialFilter::target_residue_
private

Referenced by apply(), compute(), and report().

core::pack::task::TaskFactoryOP protocols::simple_filters::ResidueBurialFilter::task_factory_
private

Referenced by task_factory().


The documentation for this class was generated from the following files: