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protocols::simple_moves::sidechain_moves::JumpRotamerSidechainMover Member List

This is the complete list of members for protocols::simple_moves::sidechain_moves::JumpRotamerSidechainMover, including all inherited members.

apply(core::pose::Pose &pose)protocols::simple_moves::sidechain_moves::SidechainMoverBasevirtual
protocols::canonical_sampling::ThermodynamicMover::apply(core::io::serialization::PipeMap &pmap)protocols::moves::Movervirtual
build_rotamer_list(core::conformation::Residue const &, bool filter, RotamerList &) const protocols::simple_moves::sidechain_moves::PerturbRotamerSidechainMover
change_chi_without_replacing_residue() const protocols::simple_moves::sidechain_moves::SidechainMoverBase
ChiVector typedefprotocols::simple_moves::sidechain_moves::SidechainMoverBase
clear_info()protocols::moves::Moverinlinevirtual
clone() const protocols::simple_moves::sidechain_moves::JumpRotamerSidechainMovervirtual
compute_proposal_density(core::conformation::Residue const &new_residue, core::Size const resnum, core::chemical::ResidueType const &old_res_type, ChiVector const &old_chi) const protocols::simple_moves::sidechain_moves::JumpRotamerSidechainMovervirtual
compute_rotdensities(RotamerList const &, ChiVector const &new_chi, core::Real &rot_density) const protocols::simple_moves::sidechain_moves::JumpRotamerSidechainMoverprotected
protocols::simple_moves::sidechain_moves::PerturbRotamerSidechainMover::compute_rotdensities(RotamerList const &, ChiVector const &old_chi, ChiVector const &new_chi, core::Real &within_rot_density) const protocols::simple_moves::sidechain_moves::PerturbRotamerSidechainMover
compute_tempered_rotamer_probabilities(RotamerList const &, core::Real temperature, utility::vector1< core::Real > &prob, core::Real &normalize) const protocols::simple_moves::sidechain_moves::JumpRotamerSidechainMoverprotected
create()protocols::moves::Movervirtual
dof_id_ranges(core::pose::Pose &pose)protocols::simple_moves::sidechain_moves::SidechainMoverBasevirtual
Filters_map typedefprotocols::moves::Mover
finalize_simulation(core::pose::Pose &pose, protocols::canonical_sampling::MetropolisHastingsMover const &metropolis_hastings_mover)protocols::canonical_sampling::ThermodynamicMovervirtual
fresh_instance() const protocols::moves::Movervirtual
get_additional_output()protocols::moves::Movervirtual
get_current_job() const protocols::moves::Mover
get_current_tag() const protocols::moves::Moverinline
get_input_pose() const protocols::moves::Mover
get_last_move_status() const protocols::moves::Mover
get_name() const protocols::simple_moves::sidechain_moves::JumpRotamerSidechainMovervirtual
get_native_pose() const protocols::moves::Mover
get_type() const protocols::moves::Moverinline
have_mutated_residue() const protocols::simple_moves::sidechain_moves::SidechainMoverBaseinlinevirtual
idealize_sidechains(core::pose::Pose &pose)protocols::simple_moves::sidechain_moves::SidechainMoverBase
info()protocols::moves::Moverinlinevirtual
info() const protocols::moves::Moverinlinevirtual
init_task(core::pose::Pose const &pose)protocols::simple_moves::sidechain_moves::SidechainMoverBase
initialize_simulation(core::pose::Pose &pose, protocols::canonical_sampling::MetropolisHastingsMover const &metropolis_hastings_mover, core::Size cycle)protocols::simple_moves::sidechain_moves::SidechainMoverBasevirtual
is_multi_trial()protocols::canonical_sampling::ThermodynamicMovervirtual
JumpRotamerSidechainMover()protocols::simple_moves::sidechain_moves::JumpRotamerSidechainMover
JumpRotamerSidechainMover(core::pack::dunbrack::RotamerLibrary const &rotamer_library)protocols::simple_moves::sidechain_moves::JumpRotamerSidechainMover
JumpRotamerSidechainMover(JumpRotamerSidechainMover const &mover)protocols::simple_moves::sidechain_moves::JumpRotamerSidechainMover
last_inner_score_temperature_delta()protocols::canonical_sampling::ThermodynamicMovervirtual
last_proposal_density_ratio()protocols::simple_moves::sidechain_moves::SidechainMoverBasevirtual
make_chi_move(core::conformation::Residue const &residue, ChiVector const &old_chi, ChiVector &new_chi)protocols::simple_moves::sidechain_moves::JumpRotamerSidechainMovervirtual
make_move(core::conformation::ResidueOP res)protocols::simple_moves::sidechain_moves::SidechainMoverBasevirtual
metropolis_hastings_mover()protocols::canonical_sampling::ThermodynamicMovervirtual
Mover()protocols::moves::Mover
Mover(std::string const &type_name)protocols::moves::Mover
Mover(Mover const &other)protocols::moves::Mover
name()protocols::moves::Moverinlinestatic
observe_after_metropolis(protocols::canonical_sampling::MetropolisHastingsMover const &metropolis_hastings_mover)protocols::canonical_sampling::ThermodynamicMovervirtual
operator=(Mover const &other)protocols::moves::Mover
packed_residues() const protocols::simple_moves::sidechain_moves::SidechainMoverBase
Parent typedefprotocols::simple_moves::sidechain_moves::JumpRotamerSidechainMover
parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache)protocols::moves::Movervirtual
parse_my_tag(utility::tag::TagPtr const tag, protocols::moves::DataMap &data, protocols::filters::Filters_map const &filters, protocols::moves::Movers_map const &movers, core::pose::Pose const &pose)protocols::simple_moves::sidechain_moves::JumpRotamerSidechainMovervirtual
parse_state(SerializableState const &state)protocols::moves::Movervirtual
PerturbRotamerSidechainMover()protocols::simple_moves::sidechain_moves::PerturbRotamerSidechainMover
PerturbRotamerSidechainMover(core::pack::dunbrack::RotamerLibrary const &rotamer_library)protocols::simple_moves::sidechain_moves::PerturbRotamerSidechainMover
PerturbRotamerSidechainMover(PerturbRotamerSidechainMover const &mover)protocols::simple_moves::sidechain_moves::PerturbRotamerSidechainMover
Pose typedefprotocols::moves::Mover
PoseCOP typedefprotocols::moves::Mover
preserve_detailed_balance() const protocols::simple_moves::sidechain_moves::SidechainMoverBasevirtual
register_options()protocols::moves::Moverinlinestatic
reinitialize_for_each_job() const protocols::moves::Movervirtual
reinitialize_for_new_input() const protocols::moves::Movervirtual
reset_status()protocols::moves::Mover
residue_packed() const protocols::simple_moves::sidechain_moves::SidechainMoverBase
rotamer_library() const protocols::simple_moves::sidechain_moves::SidechainMoverBase
RotamerList typedefprotocols::simple_moves::sidechain_moves::PerturbRotamerSidechainMover
sample_rotwells_unif_protocols::simple_moves::sidechain_moves::JumpRotamerSidechainMoverprivate
save_state(SerializableState &state)protocols::moves::Movervirtual
set_change_chi_without_replacing_residue(bool setting)protocols::simple_moves::sidechain_moves::SidechainMoverBase
set_current_job(protocols::jobdist::BasicJobCOP job)protocols::moves::Mover
set_current_tag(std::string const &new_tag)protocols::moves::Moverinline
set_defaults()protocols::simple_moves::sidechain_moves::JumpRotamerSidechainMoverprotected
set_input_pose(PoseCOP pose)protocols::moves::Movervirtual
set_last_move_status(MoverStatus status)protocols::moves::Moverprotected
set_metropolis_hastings_mover(protocols::canonical_sampling::MetropolisHastingsMoverAP metropolis_hastings_mover)protocols::canonical_sampling::ThermodynamicMovervirtual
set_native_pose(PoseCOP pose)protocols::moves::Movervirtual
set_preserve_detailed_balance(bool setting)protocols::simple_moves::sidechain_moves::SidechainMoverBasevirtual
set_task(core::pack::task::PackerTaskCOP task)protocols::simple_moves::sidechain_moves::SidechainMoverBase
set_task_factory(core::pack::task::TaskFactoryCOP task_factory)protocols::simple_moves::sidechain_moves::SidechainMoverBase
set_temperature(core::Real setting)protocols::simple_moves::sidechain_moves::PerturbRotamerSidechainMoverinline
SidechainMoverBase()protocols::simple_moves::sidechain_moves::SidechainMoverBase
SidechainMoverBase(core::pack::dunbrack::RotamerLibrary const &rotamer_library)protocols::simple_moves::sidechain_moves::SidechainMoverBase
SidechainMoverBase(SidechainMoverBase const &mover)protocols::simple_moves::sidechain_moves::SidechainMoverBase
Strings typedefprotocols::moves::Mover
suggest_residue_number(core::pose::Pose const &) const protocols::simple_moves::sidechain_moves::SidechainMoverBasevirtual
TagPtr typedefprotocols::moves::Mover
task() const protocols::simple_moves::sidechain_moves::SidechainMoverBase
task_factory() const protocols::simple_moves::sidechain_moves::SidechainMoverBase
temperature() const protocols::simple_moves::sidechain_moves::PerturbRotamerSidechainMoverinline
test_move(Pose &pose)protocols::moves::Moverinlinevirtual
ThermodynamicMover()protocols::canonical_sampling::ThermodynamicMover
torsion_id_ranges(core::pose::Pose &pose)protocols::simple_moves::sidechain_moves::SidechainMoverBasevirtual
type() const protocols::moves::Moverinline
type(const std::string &type_in)protocols::moves::Moverinline
~Mover()protocols::moves::Movervirtual
~SidechainMoverBase()protocols::simple_moves::sidechain_moves::SidechainMoverBase
~ThermodynamicMover()protocols::canonical_sampling::ThermodynamicMovervirtual