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Public Member Functions | Static Public Member Functions | List of all members
core::sequence::NWAligner Class Reference

#include <NWAligner.hh>

Inheritance diagram for core::sequence::NWAligner:
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Collaboration diagram for core::sequence::NWAligner:
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Public Member Functions

 NWAligner ()
 ctor More...
 
virtual ~NWAligner ()
 dtor More...
 
virtual SequenceAlignment align (SequenceOP seq_y, SequenceOP seq_x, ScoringSchemeOP ss)
 
- Public Member Functions inherited from core::sequence::Aligner
 Aligner ()
 ctor More...
 
virtual ~Aligner ()
 dtor More...
 
void validate_input (SequenceOP seq_y, SequenceOP seq_x, ScoringSchemeOP ss)
 
SequenceAlignment traceback (SequenceOP seq_x, SequenceOP seq_y, DP_Matrix matrix, CellOP start)
 

Static Public Member Functions

static void init_matrix (Size y_len, Size x_len, ScoringSchemeOP ss, DP_Matrix &scores)
 

Constructor & Destructor Documentation

core::sequence::NWAligner::NWAligner ( )
inline

ctor

virtual core::sequence::NWAligner::~NWAligner ( )
inlinevirtual

dtor

Member Function Documentation

SequenceAlignment core::sequence::NWAligner::align ( SequenceOP  seq_y,
SequenceOP  seq_x,
ScoringSchemeOP  ss 
)
virtual
void core::sequence::NWAligner::init_matrix ( Size  y_len,
Size  x_len,
ScoringSchemeOP  ss,
DP_Matrix scores 
)
static

The documentation for this class was generated from the following files: