protocols::simple_filters::BuriedUnsatHbondFilter Class Reference

filters based on an upper bound # of buried unsatisfied polar residues More...

#include <BuriedUnsatHbondFilter.hh>

Inheritance diagram for protocols::simple_filters::BuriedUnsatHbondFilter:

Collaboration diagram for protocols::simple_filters::BuriedUnsatHbondFilter:

Public Member Functions
	BuriedUnsatHbondFilter ()
	BuriedUnsatHbondFilter (core::Size const upper_threshold, core::Size const jump_num)
bool	apply (core::pose::Pose const &pose) const
	Returns true if the given pose passes the filter, false otherwise. More...
void	report (std::ostream &out, core::pose::Pose const &pose) const
core::Real	report_sm (core::pose::Pose const &pose) const
	used to report filter internals through a score or silent file More...
core::Real	compute (core::pose::Pose const &pose) const
filters::FilterOP	clone () const
filters::FilterOP	fresh_instance () const
virtual	~BuriedUnsatHbondFilter ()
void	parse_my_tag (utility::tag::TagPtr const tag, protocols::moves::DataMap &, filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)
void	task_factory (core::pack::task::TaskFactoryOP tf)
core::pack::task::TaskFactoryOP	task_factory () const
Public Member Functions inherited from protocols::filters::Filter
	Filter ()
	Filter (std::string const &)
	Filter (Filter const &)
virtual	~Filter ()
virtual std::string	get_type () const
std::string	get_user_defined_name () const
void	set_user_defined_name (std::string const &name)
virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
virtual void	apply (core::io::serialization::PipeMap &pmap)
virtual void	score (core::io::serialization::PipeMap &pmap)
virtual core::Real	score (core::pose::Pose &pose)
virtual void	parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)
virtual std::string	name () const

Private Attributes
core::scoring::ScoreFunctionCOP	sfxn_
core::Size	upper_threshold_
core::Size	jump_num_
core::pack::task::TaskFactoryOP	task_factory_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Detailed Description

filters based on an upper bound # of buried unsatisfied polar residues

Constructor & Destructor Documentation

protocols::simple_filters::BuriedUnsatHbondFilter::BuriedUnsatHbondFilter

(

)

Referenced by clone(), and fresh_instance().

protocols::simple_filters::BuriedUnsatHbondFilter::BuriedUnsatHbondFilter	(	core::Size const	upper_threshold,
		core::Size const	jump_num
	)

protocols::simple_filters::BuriedUnsatHbondFilter::~BuriedUnsatHbondFilter ( )

virtual

Member Function Documentation

bool protocols::simple_filters::BuriedUnsatHbondFilter::apply ( core::pose::Pose const &  pose) const

virtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References compute().

filters::FilterOP protocols::simple_filters::BuriedUnsatHbondFilter::clone ( ) const

virtual

Implements protocols::filters::Filter.

References BuriedUnsatHbondFilter().

core::Real protocols::simple_filters::BuriedUnsatHbondFilter::compute

(

core::pose::Pose const &

pose)

const

References protocols::rigid::RigidBodyTransMover::apply(), core::pose::metrics::EnergyDependentCalculator::get(), core::scoring::getScoreFunction(), jump_num_, core::pose::Pose::num_jump(), protocols::rosetta_scripts::residue_packer_states(), protocols::rigid::RigidBodyTransMover::step_size(), task_factory(), task_factory_, and protocols::rigid::RigidBodyTransMover::trans_axis().

Referenced by apply(), report(), and report_sm().

filters::FilterOP protocols::simple_filters::BuriedUnsatHbondFilter::fresh_instance ( ) const

virtual

Implements protocols::filters::Filter.

References BuriedUnsatHbondFilter().

void protocols::simple_filters::BuriedUnsatHbondFilter::parse_my_tag ( utility::tag::TagPtr const  tag, protocols::moves::DataMap &  datamap, filters::Filters_map const &  , protocols::moves::Movers_map const &  , core::pose::Pose const &    )

virtual

Reimplemented from protocols::filters::Filter.

References core::TR().

void protocols::simple_filters::BuriedUnsatHbondFilter::report ( std::ostream &  out, core::pose::Pose const &  pose  ) const

virtual

Reimplemented from protocols::filters::Filter.

References compute().

core::Real protocols::simple_filters::BuriedUnsatHbondFilter::report_sm ( core::pose::Pose const &  ) const

virtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute().

void protocols::simple_filters::BuriedUnsatHbondFilter::task_factory

(

core::pack::task::TaskFactoryOP

tf)

References task_factory_.

core::pack::task::TaskFactoryOP protocols::simple_filters::BuriedUnsatHbondFilter::task_factory

(

)

const

References task_factory_.

Referenced by compute().

Member Data Documentation

core::Size protocols::simple_filters::BuriedUnsatHbondFilter::jump_num_

private

Referenced by compute().

core::scoring::ScoreFunctionCOP protocols::simple_filters::BuriedUnsatHbondFilter::sfxn_

private

core::pack::task::TaskFactoryOP protocols::simple_filters::BuriedUnsatHbondFilter::task_factory_

private

Referenced by compute(), and task_factory().

core::Size protocols::simple_filters::BuriedUnsatHbondFilter::upper_threshold_

private

---

The documentation for this class was generated from the following files:

• src/protocols/simple_filters/BuriedUnsatHbondFilter.hh
• src/protocols/protein_interface_design/parse_filters.cc
• src/protocols/simple_filters/BuriedUnsatHbondFilter.cc