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protocols::comparative_modeling::IgnoreSubsetConstraintSet Member List

This is the complete list of members for protocols::comparative_modeling::IgnoreSubsetConstraintSet, including all inherited members.

add_constraint(ConstraintCOP cst)core::scoring::constraints::ConstraintSet
add_constraints(ConstraintCOPs cst_list)core::scoring::constraints::ConstraintSet
add_dof_constraint(DOF_ID const &id, FuncOP func, ScoreType const &t=dof_constraint)core::scoring::constraints::ConstraintSet
AtomID typedefcore::scoring::constraints::ConstraintSet
attach_to_conformation(core::conformation::Conformation *conformation)core::scoring::constraints::ConstraintSet
clear()core::scoring::constraints::ConstraintSet
clone() const protocols::comparative_modeling::IgnoreSubsetConstraintSetinlinevirtual
ConstraintSet()core::scoring::constraints::ConstraintSet
ConstraintSet(ConstraintSet const &other)core::scoring::constraints::ConstraintSet
ConstraintSet(ConstraintSet const &other, core::Size start_residue, core::Size end_residue)core::scoring::constraints::ConstraintSet
ConstraintSetOP typedefprotocols::comparative_modeling::IgnoreSubsetConstraintSetprivate
deprecated_eval_atom_derivative(id::AtomID const &atom_id, pose::Pose const &pose, ScoreFunction const &, EnergyMap const &weights, Vector &F1, Vector &F2) const core::scoring::constraints::ConstraintSetvirtual
deprecated_eval_atom_derivative_for_residue_pairs(id::AtomID const &atom_id, pose::Pose const &pose, ScoreFunction const &, EnergyMap const &weights, Vector &F1, Vector &F2) const core::scoring::constraints::ConstraintSetprotectedvirtual
detach_from_conformation()core::scoring::constraints::ConstraintSet
DOF_ID typedefcore::scoring::constraints::ConstraintSet
eval_intrares_energy(conformation::Residue const &rsd, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap &emap) const core::scoring::constraints::ConstraintSetvirtual
eval_intrares_energy(conformation::Residue const &rsd, EnergyMap &emap) const core::scoring::constraints::ConstraintSet
eval_multibody_atom_derivative(id::AtomID const &atom_id, pose::Pose const &pose, ScoreFunction const &, EnergyMap const &weights, Vector &F1, Vector &F2) const core::scoring::constraints::ConstraintSetvirtual
eval_non_residue_pair_energy(Pose const &pose, ScoreFunction const &sfxn, EnergyMap &emap) const core::scoring::constraints::ConstraintSetvirtual
get_all_constraints() const core::scoring::constraints::ConstraintSet
has_constraints() const core::scoring::constraints::ConstraintSetinline
has_dof_constraints() const core::scoring::constraints::ConstraintSetinline
has_intra_residue_constraints() const core::scoring::constraints::ConstraintSetinline
has_non_residue_pair_constraints() const core::scoring::constraints::ConstraintSetinline
has_residue_pair_constraints() const core::scoring::constraints::ConstraintSetinline
ignore(int const pos) const protocols::comparative_modeling::IgnoreSubsetConstraintSet
ignore_list() const protocols::comparative_modeling::IgnoreSubsetConstraintSet
ignore_list_protocols::comparative_modeling::IgnoreSubsetConstraintSetprivate
ignore_residue(int const pos)protocols::comparative_modeling::IgnoreSubsetConstraintSet
IgnoreSubsetConstraintSet(IgnoreSubsetConstraintSet const &other)protocols::comparative_modeling::IgnoreSubsetConstraintSet
IgnoreSubsetConstraintSet(std::set< int > residues_to_ignore, ConstraintSet const &other)protocols::comparative_modeling::IgnoreSubsetConstraintSet
is_empty() const core::scoring::constraints::ConstraintSet
mark_revision_id_expired()core::scoring::constraints::ConstraintSetprotected
non_residue_pair_constraints() const core::scoring::constraints::ConstraintSetinlineprotected
on_connection_change(core::conformation::signals::ConnectionEvent const &event)core::scoring::constraints::ConstraintSet
on_length_change(conformation::signals::LengthEvent const &event)core::scoring::constraints::ConstraintSet
Pose typedefcore::scoring::constraints::ConstraintSet
remap_residue_positions(id::SequenceMapping const &smap)core::scoring::constraints::ConstraintSet
remapped_clone(pose::Pose const &src, pose::Pose const &dest, id::SequenceMappingCOP smap=NULL) const core::scoring::constraints::ConstraintSetvirtual
remove_constraint(ConstraintCOP cst, bool object_comparison)core::scoring::constraints::ConstraintSet
remove_constraints(ConstraintCOPs cst_list, bool object_comparison)core::scoring::constraints::ConstraintSet
Residue typedefcore::scoring::constraints::ConstraintSet
residue_pair_constraint_exists(int const pos1, int const pos2) const protocols::comparative_modeling::IgnoreSubsetConstraintSetinlinevirtual
residue_pair_constraints() const core::scoring::constraints::ConstraintSetprotected
residue_pair_constraints_begin(Size resid) const core::scoring::constraints::ConstraintSet
residue_pair_constraints_end(Size resid) const core::scoring::constraints::ConstraintSet
residue_pair_constraints_exists(Size const pos) const core::scoring::constraints::ConstraintSetinlinevirtual
residue_pair_energy(Residue const &rsd1, Residue const &rsd2, Pose const &pose, core::scoring::ScoreFunction const &scorefxn, core::scoring::EnergyMap &emap) const protocols::comparative_modeling::IgnoreSubsetConstraintSetvirtual
ResiduePairConstraints typedefcore::scoring::constraints::ConstraintSet
ResiduePairConstraintsIterator typedefcore::scoring::constraints::ConstraintSet
revision_id() const core::scoring::constraints::ConstraintSet
setup_for_derivatives(pose::Pose &pose, ScoreFunction const &scfxn) const core::scoring::constraints::ConstraintSetvirtual
setup_for_minimizing_for_residue(core::conformation::Residue const &rsd, core::pose::Pose const &pose, core::scoring::ScoreFunction const &sfxn, core::kinematics::MinimizerMapBase const &minmap, core::scoring::ResSingleMinimizationData &res_data_cache) const protocols::comparative_modeling::IgnoreSubsetConstraintSetvirtual
setup_for_minimizing_for_residue_pair(core::conformation::Residue const &rsd1, core::conformation::Residue const &rsd2, core::pose::Pose const &pose, core::scoring::ScoreFunction const &sfxn, core::kinematics::MinimizerMapBase const &minmap, core::scoring::ResSingleMinimizationData const &res1_data_cache, core::scoring::ResSingleMinimizationData const &res2_data_cache, core::scoring::ResPairMinimizationData &respair_data_cache) const protocols::comparative_modeling::IgnoreSubsetConstraintSetvirtual
setup_for_scoring(pose::Pose &pose, ScoreFunction const &scfxn) const core::scoring::constraints::ConstraintSetvirtual
show(std::ostream &out) const core::scoring::constraints::ConstraintSetvirtual
show_definition(std::ostream &out, core::pose::Pose const &) const core::scoring::constraints::ConstraintSetvirtual
show_numbers(std::ostream &out) const core::scoring::constraints::ConstraintSetvirtual
show_violations(std::ostream &out, pose::Pose &, Size verbose_level, Real threshold=1) const core::scoring::constraints::ConstraintSetvirtual
steal_def_clone(pose::Pose const &src, pose::Pose const &dest, id::SequenceMappingCOP smap=NULL) const core::scoring::constraints::ConstraintSetvirtual
~ConstraintSet()core::scoring::constraints::ConstraintSetinlinevirtual