protocols::nonlocal::Chunk Class Reference

#include <Chunk.hh>

Inheritance diagram for protocols::nonlocal::Chunk:

Collaboration diagram for protocols::nonlocal::Chunk:

Public Member Functions
	Chunk (const RegionOP &region, const MoveMapOP &movable)
	Default constructor <region> describes the contiguous stretch of residues. <movable> describes the modifiable degrees of freedom in the system. More...
	Chunk (const Chunk &other)
	Copy constructor. More...
virtual	~Chunk ()
	Destructor. More...
Chunk &	operator= (const Chunk &other)
	Assignment operator. More...
Size	choose () const
	Chooses an allowable insertion position on [start, stop] according to the probability distribution. More...
Size	start () const
	Lower boundary of this chunk. More...
Size	stop () const
	Upper boundary of this chunk. More...
Size	length () const
	Returns the length of this region. More...
bool	is_movable () const
	Returns true if at least one position on [start(), stop()] is movable. More...
bool	valid () const
	Returns true if there is at least one valid insertion position in the closed region [start(), stop()], false otherwise. More...

Private Types
typedef boost::math::normal	Normal
typedef core::Size	Size
typedef core::kinematics::MoveMapOP	MoveMapOP

Private Attributes
RegionOP	region_
MoveMapOP	movable_
boost::scoped_ptr < numeric::random::DistributionSampler < Normal > >	sampler_

Member Typedef Documentation

typedef core::kinematics::MoveMapOP protocols::nonlocal::Chunk::MoveMapOP

private

typedef boost::math::normal protocols::nonlocal::Chunk::Normal

private

typedef core::Size protocols::nonlocal::Chunk::Size

private

Constructor & Destructor Documentation

protocols::nonlocal::Chunk::Chunk	(	const RegionOP &	region,
		const MoveMapOP &	movable
	)

Default constructor <region> describes the contiguous stretch of residues. <movable> describes the modifiable degrees of freedom in the system.

References SALT, sampler_, SD_MULTIPLIER, start(), and stop().

protocols::nonlocal::Chunk::Chunk

(

const Chunk &

other)

Copy constructor.

References sampler_.

protocols::nonlocal::Chunk::~Chunk ( )

virtual

Destructor.

Member Function Documentation

Size protocols::nonlocal::Chunk::choose

(

)

const

Chooses an allowable insertion position on [start, stop] according to the probability distribution.

References movable_, sampler_, start(), stop(), and valid().

Referenced by protocols::nonlocal::SingleFragmentMover::apply().

bool protocols::nonlocal::Chunk::is_movable

(

)

const

Returns true if at least one position on [start(), stop()] is movable.

References movable_, start(), and stop().

Referenced by protocols::nonlocal::SingleFragmentMover::initialize_chunks(), and valid().

Size protocols::nonlocal::Chunk::length

(

)

const

Returns the length of this region.

References region_.

Chunk & protocols::nonlocal::Chunk::operator=

(

const Chunk &

other)

Assignment operator.

References movable_, region_, and sampler_.

Size protocols::nonlocal::Chunk::start

(

)

const

Lower boundary of this chunk.

References region_.

Referenced by choose(), Chunk(), is_movable(), and valid().

Size protocols::nonlocal::Chunk::stop

(

)

const

Upper boundary of this chunk.

References region_.

Referenced by choose(), Chunk(), is_movable(), and valid().

bool protocols::nonlocal::Chunk::valid

(

)

const

Returns true if there is at least one valid insertion position in the closed region [start(), stop()], false otherwise.

References is_movable(), start(), and stop().

Referenced by choose().

Member Data Documentation

MoveMapOP protocols::nonlocal::Chunk::movable_

private

Referenced by choose(), is_movable(), and operator=().

RegionOP protocols::nonlocal::Chunk::region_

private

Referenced by length(), operator=(), start(), and stop().

boost::scoped_ptr<numeric::random::DistributionSampler<Normal> > protocols::nonlocal::Chunk::sampler_

private

Referenced by choose(), Chunk(), and operator=().

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The documentation for this class was generated from the following files:

• src/protocols/nonlocal/Chunk.hh
• src/protocols/nonlocal/Chunk.cc