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core::scoring::dna::DNA_BasePotential Member List

This is the complete list of members for core::scoring::dna::DNA_BasePotential, including all inherited members.

base_pair_score(Residue const &rsd1, Residue const &rsd2) const core::scoring::dna::DNA_BasePotential
base_score(InteractionType const &type, std::string const &bases, utility::vector1< Real > const &params) const core::scoring::dna::DNA_BasePotentialprivate
base_step_score(Residue const &rsd1, Residue const &rsd2) const core::scoring::dna::DNA_BasePotential
base_string(Residue const &rsd) const core::scoring::dna::DNA_BasePotentialinlineprivate
BP_type enum valuecore::scoring::dna::DNA_BasePotentialprivate
BS_type enum valuecore::scoring::dna::DNA_BasePotentialprivate
DNA_BasePotential()core::scoring::dna::DNA_BasePotential
eval_base_pair_derivative(Residue const &rsd1, Residue const &rsd2, Vector &F1, Vector &F2, Real const sign_factor) const core::scoring::dna::DNA_BasePotential
eval_base_pair_Z_scores(Residue const &rsd1, Residue const &rsd2, utility::vector1< Real > &z_scores) const core::scoring::dna::DNA_BasePotential
eval_base_step_derivative(Residue const &rsd1, Residue const &rsd2, Vector &F1, Vector &F2, Real const external_sign_factor) const core::scoring::dna::DNA_BasePotential
eval_base_step_Z_scores(Residue const &rsd1, Residue const &rsd2, utility::vector1< Real > &z_scores) const core::scoring::dna::DNA_BasePotential
FArray3D_Real typedefcore::scoring::dna::DNA_BasePotential
FArray4D_Real typedefcore::scoring::dna::DNA_BasePotential
get_array_indices(InteractionType const &t, std::string const &bases, int &i1, int &i2) const core::scoring::dna::DNA_BasePotentialprivate
InteractionType enum namecore::scoring::dna::DNA_BasePotentialprivate
load_score_tables()core::scoring::dna::DNA_BasePotentialprivate
Matrix typedefcore::scoring::dna::DNA_BasePotential
mean(InteractionType const &t, std::string const &bases, int const p) const core::scoring::dna::DNA_BasePotentialinlineprivate
mean_core::scoring::dna::DNA_BasePotentialprivate
Params typedefcore::scoring::dna::DNA_BasePotential
Residue typedefcore::scoring::dna::DNA_BasePotential
set_mean_and_stddev(InteractionType const &type, std::string const &bases, int const index, Real mean, Real stddev)core::scoring::dna::DNA_BasePotentialprivate
set_stiffness(InteractionType const &type, std::string const &bases, int const index1, int const index2, Real const val)core::scoring::dna::DNA_BasePotentialprivate
stddev(InteractionType const &t, std::string const &bases, int const p) const core::scoring::dna::DNA_BasePotentialinlineprivate
stddev_core::scoring::dna::DNA_BasePotentialprivate
stiffness(InteractionType const &t, std::string const &bases, int const p1, int const p2) const core::scoring::dna::DNA_BasePotentialinlineprivate
stiffness_core::scoring::dna::DNA_BasePotentialprivate
~DNA_BasePotential()core::scoring::dna::DNA_BasePotentialvirtual