| assemble_outtag(utility::vector1< core::conformation::ResidueCOP > const &upstream_matchres) | protocols::match::output::PDBWriter | protected |
| assemble_remark_lines(core::pose::Pose &outpose, utility::vector1< core::conformation::ResidueCOP > const &upstream_matchres, std::map< core::Size, core::Size > const &redundant_upstream_res, utility::vector1< core::Size > const &ex_geom_ids_for_upstream_res) const | protocols::match::output::PDBWriter | |
| clear_match_data() | protocols::match::output::CloudPDBWriter | protected |
| CloudPDBWriter(MatchGrouperOP grouper) | protocols::match::output::CloudPDBWriter | |
| coordinate_cacher() | protocols::match::output::PDBWriter | protected |
| create_output_upstream_pose(utility::vector1< core::conformation::ResidueCOP > const &upstream_matchres, std::map< core::Size, core::Size > const &redundant_upstream_res, utility::vector1< core::Size > const &ex_geom_ids_for_upstream_res) | protocols::match::output::PDBWriter | |
| cst_io() const | protocols::match::output::OutputWriter | |
| cstfile_name() const | protocols::match::output::PDBWriter | |
| determine_redundant_upstream_matchres(match_dspos1 const &m, std::map< core::Size, core::Size > &redundant_upstream_res) const | protocols::match::output::OutputWriter | |
| DownstreamHitSets typedef | protocols::match::output::CloudPDBWriter | |
| ds_hitset_end_its() const | protocols::match::output::CloudPDBWriter | |
| ds_hitset_its() const | protocols::match::output::CloudPDBWriter | |
| dsbuilders() | protocols::match::output::PDBWriter | protected |
| end_output_writing() | protocols::match::output::PoseMatchOutputWriter | virtual |
| initialize_from_matcher_task(MatcherTaskCOP mtask) | protocols::match::output::PDBWriter | virtual |
| insert_match_into_pose(core::pose::Pose &pose, core::Size match_group) | protocols::match::output::PoseMatchOutputWriter | |
| insert_match_into_pose(core::pose::Pose &pose) | protocols::match::output::PoseMatchOutputWriter | |
| match_groups_dshits() const | protocols::match::output::CloudPDBWriter | |
| match_groups_ushits() const | protocols::match::output::CloudPDBWriter | |
| num_geom_cst() const | protocols::match::output::PDBWriter | |
| OutputWriter() | protocols::match::output::OutputWriter | |
| parent typedef | protocols::match::output::PoseMatchOutputWriter | |
| Parent typedef | protocols::match::output::PDBWriter | |
| PDBWriter() | protocols::match::output::PDBWriter | |
| PoseMatchOutputWriter(MatchGrouperOP grouper) | protocols::match::output::PoseMatchOutputWriter | |
| prefix() const | protocols::match::output::PDBWriter | |
| prepare_for_output_writing() | protocols::match::output::CloudPDBWriter | virtual |
| record_match(match const &m) | protocols::match::output::CloudPDBWriter | virtual |
| record_match(match_dspos1 const &m) | protocols::match::output::CloudPDBWriter | virtual |
| representative_group_matches() const | protocols::match::output::CloudPDBWriter | |
| scaf_name() const | protocols::match::output::PDBWriter | |
| set_coordinate_cacher(UpstreamHitCacherOP) | protocols::match::output::PDBWriter | |
| set_downstream_builder(Size geomcst_id, downstream::DownstreamBuilderCOP dsbuilder) | protocols::match::output::PDBWriter | |
| set_prefix(std::string const &prefix) | protocols::match::output::PDBWriter | |
| setup_hitset_iterators_for_group(core::Size const group) | protocols::match::output::CloudPDBWriter | protected |
| signature_string(utility::vector1< core::conformation::ResidueCOP > const &upstream_matchres) const | protocols::match::output::PDBWriter | |
| SizePair typedef | protocols::match::output::PDBWriter | |
| UpstreamHitSets typedef | protocols::match::output::CloudPDBWriter | |
| write_match_groups() | protocols::match::output::CloudPDBWriter | |
| ~CloudPDBWriter() | protocols::match::output::CloudPDBWriter | virtual |
| ~OutputWriter() | protocols::match::output::OutputWriter | virtual |
| ~PDBWriter() | protocols::match::output::PDBWriter | virtual |
| ~PoseMatchOutputWriter() | protocols::match::output::PoseMatchOutputWriter | |
1.8.4