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protocols::match::downstream::RigidLigandBuilder Member List

This is the complete list of members for protocols::match::downstream::RigidLigandBuilder, including all inherited members.

active_site_grid() const protocols::match::downstream::DownstreamBuilderinlineprotected
active_site_grid_set() const protocols::match::downstream::DownstreamBuilderinlineprotected
atom1_atom2_atom3_angle() const protocols::match::downstream::RigidLigandBuildervirtual
atom1_atom2_distance() const protocols::match::downstream::RigidLigandBuildervirtual
atom1_belongs_in_active_site() const protocols::match::downstream::RigidLigandBuildervirtual
atom1_radius() const protocols::match::downstream::RigidLigandBuildervirtual
atom2_atom3_distance() const protocols::match::downstream::RigidLigandBuildervirtual
atom2_belongs_in_active_site() const protocols::match::downstream::RigidLigandBuildervirtual
atom2_radius() const protocols::match::downstream::RigidLigandBuildervirtual
atom3_belongs_in_active_site() const protocols::match::downstream::RigidLigandBuildervirtual
atom3_radius() const protocols::match::downstream::RigidLigandBuildervirtual
atom_radii_protocols::match::downstream::RigidLigandBuilderprivate
atom_required_in_active_site_protocols::match::downstream::RigidLigandBuilderprivate
AtomID typedefprotocols::match::downstream::DownstreamBuilder
atoms_123_protocols::match::downstream::RigidLigandBuilderprivate
ats123_reqd_in_active_site_protocols::match::downstream::RigidLigandBuilderprivate
bbgrid() const protocols::match::downstream::DownstreamBuilderinlineprotected
bbgrid_set() const protocols::match::downstream::DownstreamBuilderinlineprotected
build(HTReal const &atom3_frame, Size const scaffold_build_point_id, Size const upstream_conf_id, Size const external_geometry_id, core::conformation::Residue const &upstream_residue) const protocols::match::downstream::RigidLigandBuildervirtual
clone() const protocols::match::downstream::RigidLigandBuildervirtual
compatible(Hit const &my_hit, DownstreamBuilder const &other, Hit const &other_hit, bool first_dispatch=true) const protocols::match::downstream::RigidLigandBuildervirtual
compatible(Hit const &my_hit, RigidLigandBuilder const &other, Hit const &other_hit, bool first_dispatch=true) const protocols::match::downstream::RigidLigandBuildervirtual
protocols::match::downstream::DownstreamBuilder::compatible(Hit const &my_hit, LigandConformerBuilder const &other, Hit const &other_hit, bool first_dispatch=true) const protocols::match::downstream::DownstreamBuildervirtual
coordinates_from_hit(Hit const &hit, utility::vector1< AtomID > const &atom_indices, utility::vector1< Vector > &atom_coords) const protocols::match::downstream::RigidLigandBuildervirtual
downstream_pose_from_hit(Hit const &hit) const protocols::match::downstream::RigidLigandBuildervirtual
downstream_restype_protocols::match::downstream::RigidLigandBuilderprivate
DownstreamBuilder()protocols::match::downstream::DownstreamBuilder
DownstreamBuilder(DownstreamBuilder const &)protocols::match::downstream::DownstreamBuilder
get_lig_conformers(core::Size conf_id) const protocols::match::downstream::RigidLigandBuildervirtual
get_upstream_restype() const protocols::match::downstream::RigidLigandBuildervirtual
hits_potentially_incompatible() const protocols::match::downstream::RigidLigandBuilderinlinevirtual
HTReal typedefprotocols::match::downstream::DownstreamBuilder
ignore_h_collisions(bool setting)protocols::match::downstream::RigidLigandBuilder
ignore_h_collisions_protocols::match::downstream::RigidLigandBuilderprivate
initialize_from_residue(Size atom1, Size atom2, Size atom3, Size orientation_atom1, Size orientation_atom2, Size orientation_atom3, core::conformation::Residue const &residue)protocols::match::downstream::RigidLigandBuilder
initialize_upstream_nonbonded_min_separation_d2()protocols::match::downstream::RigidLigandBuilderprivate
initialize_upstream_residue(core::chemical::ResidueTypeCOP upstream_res, core::scoring::etable::count_pair::CountPairFunctionCOP count_pair=0)protocols::match::downstream::RigidLigandBuilder
lig_conformers_protocols::match::downstream::RigidLigandBuilderprivate
min_sep_d2_from_upstream_atoms_protocols::match::downstream::RigidLigandBuilderprivate
n_possible_hits_per_at3frame() const protocols::match::downstream::RigidLigandBuildervirtual
non_collision_detection_atoms_reqd_in_active_site_protocols::match::downstream::RigidLigandBuilderprivate
occ_space() const protocols::match::downstream::DownstreamBuilderinlineprotected
occ_space_set() const protocols::match::downstream::DownstreamBuilderinlineprotected
orientation_atoms_protocols::match::downstream::RigidLigandBuilderprivate
parent typedefprotocols::match::downstream::RigidLigandBuilder
radii_123_protocols::match::downstream::RigidLigandBuilderprivate
Real typedefprotocols::match::downstream::DownstreamBuilder
require_atom_to_reside_in_active_site(core::id::AtomID const &id)protocols::match::downstream::RigidLigandBuildervirtual
RigidLigandBuilder()protocols::match::downstream::RigidLigandBuilder
RigidLigandBuilder(RigidLigandBuilder const &)protocols::match::downstream::RigidLigandBuilder
set_active_site_grid(ActiveSiteGridCOP active_site_grid)protocols::match::downstream::DownstreamBuilder
set_bb_grid(BumpGridCOP bbgrid)protocols::match::downstream::RigidLigandBuildervirtual
set_occupied_space_hash(OccupiedSpaceHashCOP occ_space)protocols::match::downstream::DownstreamBuilder
upstream_restype_protocols::match::downstream::RigidLigandBuilderprivate
Vector typedefprotocols::match::downstream::DownstreamBuilder
~DownstreamBuilder()protocols::match::downstream::DownstreamBuildervirtual
~RigidLigandBuilder()protocols::match::downstream::RigidLigandBuildervirtual