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protocols::simple_filters::NonSequentialNeighborsFilter Class Reference

#include <NonSequentialNeighborsFilter.hh>

Inheritance diagram for protocols::simple_filters::NonSequentialNeighborsFilter:
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Public Member Functions

 NonSequentialNeighborsFilter ()
 
bool apply (core::pose::Pose const &pose) const
 Returns true if the given pose passes the filter, false otherwise. More...
 
filters::FilterOP clone () const
 
filters::FilterOP fresh_instance () const
 
void report (std::ostream &out, core::pose::Pose const &pose) const
 
core::Real report_sm (core::pose::Pose const &pose) const
 used to report filter internals through a score or silent file More...
 
core::Real compute (core::pose::Pose const &pose) const
 
virtual ~NonSequentialNeighborsFilter ()
 
void parse_my_tag (utility::tag::TagPtr const tag, protocols::moves::DataMap &, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)
 
core::Real distance_threshold () const
 
void distance_threshold (core::Real const r)
 
core::Size neighbor_cutoff () const
 
void neighbor_cutoff (core::Size const n)
 
bool bound () const
 
void bound (bool const b)
 
core::Size resnum () const
 
void resnum (core::Size const s)
 
void jump (core::Size const j)
 
core::Size jump () const
 
core::Size residue_neighbors (core::pose::Pose const &pose, core::Size const resi) const
 
- Public Member Functions inherited from protocols::filters::Filter
 Filter ()
 
 Filter (std::string const &)
 
 Filter (Filter const &)
 
virtual ~Filter ()
 
virtual std::string get_type () const
 
std::string get_user_defined_name () const
 
void set_user_defined_name (std::string const &name)
 
virtual void clear ()
 used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
 
virtual void apply (core::io::serialization::PipeMap &pmap)
 
virtual void score (core::io::serialization::PipeMap &pmap)
 
virtual core::Real score (core::pose::Pose &pose)
 
virtual void parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)
 
virtual std::string name () const
 

Private Attributes

core::Real distance_threshold_
 
core::Size neighbor_cutoff_
 
bool bound_
 
core::Size resnum_
 
core::Size jump_
 

Additional Inherited Members

- Protected Attributes inherited from protocols::filters::Filter
std::string scorename_
 

Constructor & Destructor Documentation

protocols::simple_filters::NonSequentialNeighborsFilter::NonSequentialNeighborsFilter ( )

Referenced by clone(), and fresh_instance().

protocols::simple_filters::NonSequentialNeighborsFilter::~NonSequentialNeighborsFilter ( )
virtual

Member Function Documentation

bool protocols::simple_filters::NonSequentialNeighborsFilter::apply ( core::pose::Pose const &  pose) const
virtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References compute().

bool protocols::simple_filters::NonSequentialNeighborsFilter::bound ( ) const
inline
void protocols::simple_filters::NonSequentialNeighborsFilter::bound ( bool const  b)
inline
filters::FilterOP protocols::simple_filters::NonSequentialNeighborsFilter::clone ( ) const
inlinevirtual
core::Real protocols::simple_filters::NonSequentialNeighborsFilter::compute ( core::pose::Pose const &  pose) const
core::Real protocols::simple_filters::NonSequentialNeighborsFilter::distance_threshold ( ) const
inline
void protocols::simple_filters::NonSequentialNeighborsFilter::distance_threshold ( core::Real const  r)
inline

References distance_threshold_.

filters::FilterOP protocols::simple_filters::NonSequentialNeighborsFilter::fresh_instance ( ) const
inlinevirtual
void protocols::simple_filters::NonSequentialNeighborsFilter::jump ( core::Size const  j)
inline
core::Size protocols::simple_filters::NonSequentialNeighborsFilter::jump ( ) const
inline

References jump_.

Referenced by compute(), and parse_my_tag().

core::Size protocols::simple_filters::NonSequentialNeighborsFilter::neighbor_cutoff ( ) const
inline
void protocols::simple_filters::NonSequentialNeighborsFilter::neighbor_cutoff ( core::Size const  n)
inline

References neighbor_cutoff_.

void protocols::simple_filters::NonSequentialNeighborsFilter::parse_my_tag ( utility::tag::TagPtr const  tag,
protocols::moves::DataMap ,
protocols::filters::Filters_map const &  ,
protocols::moves::Movers_map const &  ,
core::pose::Pose const &   
)
virtual
void protocols::simple_filters::NonSequentialNeighborsFilter::report ( std::ostream &  out,
core::pose::Pose const &  pose 
) const
virtual

Reimplemented from protocols::filters::Filter.

References compute().

core::Real protocols::simple_filters::NonSequentialNeighborsFilter::report_sm ( core::pose::Pose const &  ) const
virtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute().

core::Size protocols::simple_filters::NonSequentialNeighborsFilter::residue_neighbors ( core::pose::Pose const &  pose,
core::Size const  resi 
) const
core::Size protocols::simple_filters::NonSequentialNeighborsFilter::resnum ( ) const
inline
void protocols::simple_filters::NonSequentialNeighborsFilter::resnum ( core::Size const  s)
inline

References resnum_.

Member Data Documentation

bool protocols::simple_filters::NonSequentialNeighborsFilter::bound_
private

Referenced by bound().

core::Real protocols::simple_filters::NonSequentialNeighborsFilter::distance_threshold_
private

Referenced by distance_threshold().

core::Size protocols::simple_filters::NonSequentialNeighborsFilter::jump_
private

Referenced by jump().

core::Size protocols::simple_filters::NonSequentialNeighborsFilter::neighbor_cutoff_
private

Referenced by neighbor_cutoff().

core::Size protocols::simple_filters::NonSequentialNeighborsFilter::resnum_
private

Referenced by resnum().


The documentation for this class was generated from the following files: