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Public Types | Public Member Functions | Private Attributes | List of all members
protocols::fldsgn::filters::CoreDunbrackFilter Class Reference

#include <CoreDunbrackFilter.hh>

Inheritance diagram for protocols::fldsgn::filters::CoreDunbrackFilter:
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Collaboration diagram for protocols::fldsgn::filters::CoreDunbrackFilter:
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Public Types

typedef protocols::filters::Filter Super
 
typedef protocols::filters::Filter Filter
 
typedef
protocols::filters::FilterOP 
FilterOP
 
typedef core::Real Real
 
typedef core::pose::Pose Pose
 
typedef std::string String
 
typedef
core::scoring::ScoreFunction 
ScoreFunction
 
typedef
core::scoring::ScoreFunctionOP 
ScoreFunctionOP
 
typedef utility::tag::TagPtr TagPtr
 
typedef
protocols::filters::Filters_map 
Filters_map
 
typedef protocols::moves::DataMap DataMap
 
typedef
protocols::moves::Movers_map 
Movers_map
 

Public Member Functions

 CoreDunbrackFilter ()
 
 CoreDunbrackFilter (String const &type, Real const value)
 
 CoreDunbrackFilter (CoreDunbrackFilter const &rval)
 
virtual ~CoreDunbrackFilter ()
 
virtual FilterOP clone () const
 
virtual FilterOP fresh_instance () const
 
void filter_value (Real const &ss)
 
void filter_type (String const &ss)
 
virtual std::string name () const
 
virtual void parse_my_tag (TagPtr const tag, DataMap &, Filters_map const &, Movers_map const &, Pose const &pose)
 parse xml More...
 
virtual bool apply (Pose const &pose) const
 Returns true if the given pose passes the filter, false otherwise. More...
 
virtual Real report_sm (Pose const &pose) const
 used to report filter internals through a score or silent file More...
 
virtual void report (std::ostream &out, Pose const &pose) const
 used to report score More...
 
Real compute (Pose const &pose) const
 
- Public Member Functions inherited from protocols::filters::Filter
 Filter ()
 
 Filter (std::string const &)
 
 Filter (Filter const &)
 
virtual ~Filter ()
 
virtual std::string get_type () const
 
std::string get_user_defined_name () const
 
void set_user_defined_name (std::string const &name)
 
virtual void clear ()
 used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
 
virtual void apply (core::io::serialization::PipeMap &pmap)
 
virtual void score (core::io::serialization::PipeMap &pmap)
 
virtual core::Real score (core::pose::Pose &pose)
 
virtual void parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)
 

Private Attributes

Real filter_value_
 
String type_
 
Real fa_dun_danger_
 

Additional Inherited Members

- Protected Attributes inherited from protocols::filters::Filter
std::string scorename_
 

Member Typedef Documentation

Constructor & Destructor Documentation

protocols::fldsgn::filters::CoreDunbrackFilter::CoreDunbrackFilter ( )

Referenced by clone(), and fresh_instance().

protocols::fldsgn::filters::CoreDunbrackFilter::CoreDunbrackFilter ( String const &  type,
Real const  value 
)
protocols::fldsgn::filters::CoreDunbrackFilter::CoreDunbrackFilter ( CoreDunbrackFilter const &  rval)
virtual protocols::fldsgn::filters::CoreDunbrackFilter::~CoreDunbrackFilter ( )
inlinevirtual

Member Function Documentation

bool protocols::fldsgn::filters::CoreDunbrackFilter::apply ( Pose const &  pose) const
virtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References compute(), filter_value_, tr(), and type_.

virtual FilterOP protocols::fldsgn::filters::CoreDunbrackFilter::clone ( ) const
inlinevirtual
CoreDunbrackFilter::Real protocols::fldsgn::filters::CoreDunbrackFilter::compute ( Pose const &  pose) const
void protocols::fldsgn::filters::CoreDunbrackFilter::filter_type ( String const &  ss)

References type_.

void protocols::fldsgn::filters::CoreDunbrackFilter::filter_value ( Real const &  ss)

References filter_value_.

virtual FilterOP protocols::fldsgn::filters::CoreDunbrackFilter::fresh_instance ( ) const
inlinevirtual
virtual std::string protocols::fldsgn::filters::CoreDunbrackFilter::name ( ) const
inlinevirtual

Reimplemented from protocols::filters::Filter.

void protocols::fldsgn::filters::CoreDunbrackFilter::parse_my_tag ( TagPtr const  tag,
DataMap ,
Filters_map const &  ,
Movers_map const &  ,
Pose const &  pose 
)
virtual

parse xml

Reimplemented from protocols::filters::Filter.

References filter_value_, core::pose::Pose::total_residue(), tr(), and type_.

void protocols::fldsgn::filters::CoreDunbrackFilter::report ( std::ostream &  out,
Pose const &  pose 
) const
virtual

used to report score

Reimplemented from protocols::filters::Filter.

References compute().

CoreDunbrackFilter::Real protocols::fldsgn::filters::CoreDunbrackFilter::report_sm ( Pose const &  ) const
virtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute().

Member Data Documentation

Real protocols::fldsgn::filters::CoreDunbrackFilter::fa_dun_danger_
private

Referenced by compute().

Real protocols::fldsgn::filters::CoreDunbrackFilter::filter_value_
private

Referenced by apply(), filter_value(), and parse_my_tag().

String protocols::fldsgn::filters::CoreDunbrackFilter::type_
private

The documentation for this class was generated from the following files: