#include <CoreDunbrackFilter.hh>

Inheritance diagram for protocols::fldsgn::filters::CoreDunbrackFilter:

Collaboration diagram for protocols::fldsgn::filters::CoreDunbrackFilter:

Public Types
typedef protocols::filters::Filter	Super

typedef protocols::filters::Filter	Filter

typedef protocols::filters::FilterOP	FilterOP

typedef core::Real	Real

typedef core::pose::Pose	Pose

typedef std::string	String

typedef core::scoring::ScoreFunction	ScoreFunction

typedef core::scoring::ScoreFunctionOP	ScoreFunctionOP

typedef utility::tag::TagPtr	TagPtr

typedef protocols::filters::Filters_map	Filters_map

typedef protocols::moves::DataMap	DataMap

typedef protocols::moves::Movers_map	Movers_map

Public Member Functions
	CoreDunbrackFilter ()

	CoreDunbrackFilter (String const &type, Real const value)

	CoreDunbrackFilter (CoreDunbrackFilter const &rval)

virtual	~CoreDunbrackFilter ()

virtual FilterOP	clone () const

virtual FilterOP	fresh_instance () const

void	filter_value (Real const &ss)

void	filter_type (String const &ss)

virtual std::string	name () const

virtual void	parse_my_tag (TagPtr const tag, DataMap &, Filters_map const &, Movers_map const &, Pose const &pose)
	parse xml More...

virtual bool	apply (Pose const &pose) const
	Returns true if the given pose passes the filter, false otherwise. More...

virtual Real	report_sm (Pose const &pose) const
	used to report filter internals through a score or silent file More...

virtual void	report (std::ostream &out, Pose const &pose) const
	used to report score More...

Real	compute (Pose const &pose) const

Public Member Functions inherited from protocols::filters::Filter
	Filter ()

	Filter (std::string const &)

	Filter (Filter const &)

virtual	~Filter ()

virtual std::string	get_type () const

std::string	get_user_defined_name () const

void	set_user_defined_name (std::string const &name)

virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...

virtual void	apply (core::io::serialization::PipeMap &pmap)

virtual void	score (core::io::serialization::PipeMap &pmap)

virtual core::Real	score (core::pose::Pose &pose)

virtual void	parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)

Private Attributes
Real	filter_value_

String	type_

Real	fa_dun_danger_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Member Typedef Documentation

typedef protocols::moves::DataMap protocols::fldsgn::filters::CoreDunbrackFilter::DataMap

typedef protocols::filters::Filter protocols::fldsgn::filters::CoreDunbrackFilter::Filter

typedef protocols::filters::FilterOP protocols::fldsgn::filters::CoreDunbrackFilter::FilterOP

typedef protocols::filters::Filters_map protocols::fldsgn::filters::CoreDunbrackFilter::Filters_map

typedef protocols::moves::Movers_map protocols::fldsgn::filters::CoreDunbrackFilter::Movers_map

typedef core::pose::Pose protocols::fldsgn::filters::CoreDunbrackFilter::Pose

typedef core::Real protocols::fldsgn::filters::CoreDunbrackFilter::Real

typedef core::scoring::ScoreFunction protocols::fldsgn::filters::CoreDunbrackFilter::ScoreFunction

typedef core::scoring::ScoreFunctionOP protocols::fldsgn::filters::CoreDunbrackFilter::ScoreFunctionOP

typedef std::string protocols::fldsgn::filters::CoreDunbrackFilter::String

typedef protocols::filters::Filter protocols::fldsgn::filters::CoreDunbrackFilter::Super

typedef utility::tag::TagPtr protocols::fldsgn::filters::CoreDunbrackFilter::TagPtr

Constructor & Destructor Documentation

protocols::fldsgn::filters::CoreDunbrackFilter::CoreDunbrackFilter ( )

Referenced by clone(), and fresh_instance().

protocols::fldsgn::filters::CoreDunbrackFilter::CoreDunbrackFilter	(	String const &	type,
		Real const	value
	)

protocols::fldsgn::filters::CoreDunbrackFilter::CoreDunbrackFilter ( CoreDunbrackFilter const & rval)

virtual protocols::fldsgn::filters::CoreDunbrackFilter::~CoreDunbrackFilter ( )

inlinevirtual

Member Function Documentation

bool protocols::fldsgn::filters::CoreDunbrackFilter::apply ( Pose const & pose) const

virtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References compute(), filter_value_, tr(), and type_.

virtual FilterOP protocols::fldsgn::filters::CoreDunbrackFilter::clone ( ) const

inlinevirtual

Implements protocols::filters::Filter.

References CoreDunbrackFilter().

CoreDunbrackFilter::Real protocols::fldsgn::filters::CoreDunbrackFilter::compute ( Pose const & pose) const

References core::pose::Pose::aa(), core::scoring::calc_per_atom_sasa(), core::scoring::ScoreFunctionFactory::create_score_function(), core::pose::Pose::energies(), core::scoring::fa_dun, fa_dun_danger_, core::pose::initialize_atomid_map(), core::chemical::name_from_aa(), core::scoring::Energies::residue_total_energies(), core::scoring::SCORE12_PATCH, core::id::AtomID_Map< T >::set(), core::scoring::STANDARD_WTS, core::pose::Pose::total_residue(), tr(), and type_.

Referenced by apply(), report(), and report_sm().

void protocols::fldsgn::filters::CoreDunbrackFilter::filter_type ( String const & ss)

References type_.

void protocols::fldsgn::filters::CoreDunbrackFilter::filter_value ( Real const & ss)

References filter_value_.

virtual FilterOP protocols::fldsgn::filters::CoreDunbrackFilter::fresh_instance ( ) const

inlinevirtual

Implements protocols::filters::Filter.

References CoreDunbrackFilter().

virtual std::string protocols::fldsgn::filters::CoreDunbrackFilter::name ( ) const

inlinevirtual

Reimplemented from protocols::filters::Filter.

void protocols::fldsgn::filters::CoreDunbrackFilter::parse_my_tag	(	TagPtr const	tag,
		DataMap &	,
		Filters_map const &	,
		Movers_map const &	,
		Pose const &	pose
	)