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Public Member Functions | Private Attributes | List of all members
protocols::simple_filters::EnergyPerResidueFilter Class Reference

#include <EnergyPerResidueFilter.hh>

Inheritance diagram for protocols::simple_filters::EnergyPerResidueFilter:
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Collaboration diagram for protocols::simple_filters::EnergyPerResidueFilter:
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Public Member Functions

 EnergyPerResidueFilter ()
 
 EnergyPerResidueFilter (core::Size const resnum, core::scoring::ScoreFunctionCOP scorefxn, core::scoring::ScoreType const score_type, core::Real const threshold, bool const whole_interface=false, core::Size const rb_jump=1, core::Real const interface_distance_cutoff=8.0, bool const bb_bb=false)
 
 EnergyPerResidueFilter (EnergyPerResidueFilter const &init)
 
bool apply (core::pose::Pose const &pose) const
 Returns true if the given pose passes the filter, false otherwise. More...
 
filters::FilterOP clone () const
 
filters::FilterOP fresh_instance () const
 
void report (std::ostream &out, core::pose::Pose const &pose) const
 
core::Real report_sm (core::pose::Pose const &pose) const
 used to report filter internals through a score or silent file More...
 
core::Real compute (core::pose::Pose const &pose) const
 
virtual ~EnergyPerResidueFilter ()
 
void parse_my_tag (utility::tag::TagPtr const tag, protocols::moves::DataMap &, filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)
 
core::Size resnum () const
 
core::scoring::ScoreFunctionOP scorefxn () const
 
core::scoring::ScoreType score_type () const
 
core::Real threshold () const
 
bool bb_bb () const
 
void resnum (core::Size const rn)
 
void scorefxn (core::scoring::ScoreFunctionOP scorefxn)
 
void score_type (core::scoring::ScoreType score_type)
 
void threshold (core::Real const th)
 
void bb_bb (bool const b_b)
 
- Public Member Functions inherited from protocols::filters::Filter
 Filter ()
 
 Filter (std::string const &)
 
 Filter (Filter const &)
 
virtual ~Filter ()
 
virtual std::string get_type () const
 
std::string get_user_defined_name () const
 
void set_user_defined_name (std::string const &name)
 
virtual void clear ()
 used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
 
virtual void apply (core::io::serialization::PipeMap &pmap)
 
virtual void score (core::io::serialization::PipeMap &pmap)
 
virtual core::Real score (core::pose::Pose &pose)
 
virtual void parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)
 
virtual std::string name () const
 

Private Attributes

core::Size resnum_
 
core::scoring::ScoreFunctionOP scorefxn_
 
core::scoring::ScoreType score_type_
 
core::Real threshold_
 
bool whole_interface_
 
core::Size rb_jump_
 
core::Real interface_distance_cutoff_
 
bool bb_bb_
 

Additional Inherited Members

- Protected Attributes inherited from protocols::filters::Filter
std::string scorename_
 

Constructor & Destructor Documentation

protocols::simple_filters::EnergyPerResidueFilter::EnergyPerResidueFilter ( )
inline

Referenced by clone(), and fresh_instance().

protocols::simple_filters::EnergyPerResidueFilter::EnergyPerResidueFilter ( core::Size const  resnum,
core::scoring::ScoreFunctionCOP  scorefxn,
core::scoring::ScoreType const  score_type,
core::Real const  threshold,
bool const  whole_interface = false,
core::Size const  rb_jump = 1,
core::Real const  interface_distance_cutoff = 8.0,
bool const  bb_bb = false 
)
protocols::simple_filters::EnergyPerResidueFilter::EnergyPerResidueFilter ( EnergyPerResidueFilter const &  init)

References scorefxn_.

protocols::simple_filters::EnergyPerResidueFilter::~EnergyPerResidueFilter ( )
virtual

Member Function Documentation

bool protocols::simple_filters::EnergyPerResidueFilter::apply ( core::pose::Pose const &  pose) const
virtual
bool protocols::simple_filters::EnergyPerResidueFilter::bb_bb ( ) const

References bb_bb_.

void protocols::simple_filters::EnergyPerResidueFilter::bb_bb ( bool const  b_b)

References bb_bb_.

filters::FilterOP protocols::simple_filters::EnergyPerResidueFilter::clone ( ) const
inlinevirtual
core::Real protocols::simple_filters::EnergyPerResidueFilter::compute ( core::pose::Pose const &  pose) const
filters::FilterOP protocols::simple_filters::EnergyPerResidueFilter::fresh_instance ( ) const
inlinevirtual
void protocols::simple_filters::EnergyPerResidueFilter::parse_my_tag ( utility::tag::TagPtr const  tag,
protocols::moves::DataMap data,
filters::Filters_map const &  ,
protocols::moves::Movers_map const &  ,
core::pose::Pose const &  pose 
)
virtual
void protocols::simple_filters::EnergyPerResidueFilter::report ( std::ostream &  out,
core::pose::Pose const &  pose 
) const
virtual
core::Real protocols::simple_filters::EnergyPerResidueFilter::report_sm ( core::pose::Pose const &  ) const
virtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute().

core::Size protocols::simple_filters::EnergyPerResidueFilter::resnum ( ) const

References resnum_.

void protocols::simple_filters::EnergyPerResidueFilter::resnum ( core::Size const  rn)

References resnum_.

core::scoring::ScoreType protocols::simple_filters::EnergyPerResidueFilter::score_type ( ) const

References score_type_.

Referenced by score_type().

void protocols::simple_filters::EnergyPerResidueFilter::score_type ( core::scoring::ScoreType  score_type)

References score_type(), and score_type_.

core::scoring::ScoreFunctionOP protocols::simple_filters::EnergyPerResidueFilter::scorefxn ( ) const

References scorefxn_.

Referenced by scorefxn().

void protocols::simple_filters::EnergyPerResidueFilter::scorefxn ( core::scoring::ScoreFunctionOP  scorefxn)

References scorefxn(), and scorefxn_.

core::Real protocols::simple_filters::EnergyPerResidueFilter::threshold ( ) const

References threshold_.

void protocols::simple_filters::EnergyPerResidueFilter::threshold ( core::Real const  th)

References threshold_.

Member Data Documentation

bool protocols::simple_filters::EnergyPerResidueFilter::bb_bb_
private

Referenced by bb_bb(), and compute().

core::Real protocols::simple_filters::EnergyPerResidueFilter::interface_distance_cutoff_
private

Referenced by report().

core::Size protocols::simple_filters::EnergyPerResidueFilter::rb_jump_
private

Referenced by report().

core::Size protocols::simple_filters::EnergyPerResidueFilter::resnum_
private

Referenced by apply(), compute(), report(), and resnum().

core::scoring::ScoreType protocols::simple_filters::EnergyPerResidueFilter::score_type_
private
core::scoring::ScoreFunctionOP protocols::simple_filters::EnergyPerResidueFilter::scorefxn_
private
core::Real protocols::simple_filters::EnergyPerResidueFilter::threshold_
private

Referenced by apply(), report(), and threshold().

bool protocols::simple_filters::EnergyPerResidueFilter::whole_interface_
private

Referenced by apply(), and report().


The documentation for this class was generated from the following files: