#include <DeltaFilter.hh>

Inheritance diagram for protocols::simple_filters::DeltaFilter:

Collaboration diagram for protocols::simple_filters::DeltaFilter:

Public Member Functions
	DeltaFilter ()
	default ctor More...

virtual bool	apply (core::pose::Pose const &pose) const
	Constructor with a single target residue. More...

virtual void	report (std::ostream &out, core::pose::Pose const &pose) const

virtual core::Real	report_sm (core::pose::Pose const &pose) const
	used to report filter internals through a score or silent file More...

virtual protocols::filters::FilterOP	clone () const

virtual protocols::filters::FilterOP	fresh_instance () const

core::Real	compute (core::pose::Pose const &pose) const

virtual	~DeltaFilter ()

void	parse_my_tag (utility::tag::TagPtr const tag, protocols::moves::DataMap &, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)

void	ref_baseline (core::Real const rb)

core::Real	baseline () const

void	baseline (core::Real const b)

bool	lower () const

void	lower (bool const l)

bool	upper () const

void	upper (bool const u)

void	filter (protocols::filters::FilterOP filter)

protocols::filters::FilterOP	filter () const

core::Real	range () const

void	range (core::Real const r)

bool	unbound () const

void	unbound (bool const u)

bool	relax_unbound () const

void	relax_unbound (bool const u)

core::Size	jump () const

void	jump (core::Size const j)

protocols::moves::MoverOP	relax_mover () const

void	relax_mover (protocols::moves::MoverOP const mover)

Public Member Functions inherited from protocols::filters::Filter
	Filter ()

	Filter (std::string const &)

	Filter (Filter const &)

virtual	~Filter ()

virtual std::string	get_type () const

std::string	get_user_defined_name () const

void	set_user_defined_name (std::string const &name)

virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...

virtual void	apply (core::io::serialization::PipeMap &pmap)

virtual void	score (core::io::serialization::PipeMap &pmap)

virtual core::Real	score (core::pose::Pose &pose)

virtual void	parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)

virtual std::string	name () const

Private Types
typedef protocols::filters::Filter	parent

Private Member Functions
void	unbind (core::pose::Pose &) const

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Member Typedef Documentation

typedef protocols::filters::Filter protocols::simple_filters::DeltaFilter::parent

private

Constructor & Destructor Documentation

protocols::simple_filters::DeltaFilter::DeltaFilter ( )

default ctor

Referenced by clone(), and fresh_instance().

protocols::simple_filters::DeltaFilter::~DeltaFilter ( )

virtual

Member Function Documentation

bool protocols::simple_filters::DeltaFilter::apply ( core::pose::Pose const & pose) const

virtual

Constructor with a single target residue.

Implements protocols::filters::Filter.

References compute(), lower(), range(), and upper().

core::Real protocols::simple_filters::DeltaFilter::baseline ( ) const

References baseline_, filter_, ref_baseline_, reference_pose_, relax_mover(), core::pose::Pose::total_residue(), protocols::simple_filters::TR(), and unbind().

Referenced by compute(), and parse_my_tag().

void protocols::simple_filters::DeltaFilter::baseline ( core::Real const b)

References protocols::match::upstream::b, and baseline_.

protocols::filters::FilterOP protocols::simple_filters::DeltaFilter::clone ( ) const

virtual

Implements protocols::filters::Filter.

References DeltaFilter().

core::Real protocols::simple_filters::DeltaFilter::compute ( core::pose::Pose const & pose) const

References baseline(), filter(), report_sm(), protocols::simple_filters::TR(), and unbind().

Referenced by apply(), report(), and report_sm().

void protocols::simple_filters::DeltaFilter::filter ( protocols::filters::FilterOP filter)

References filter(), and filter_.

protocols::filters::FilterOP protocols::simple_filters::DeltaFilter::filter ( ) const

References filter_.

Referenced by compute(), filter(), and parse_my_tag().

protocols::filters::FilterOP protocols::simple_filters::DeltaFilter::fresh_instance ( ) const

virtual

Implements protocols::filters::Filter.

References DeltaFilter().

core::Size protocols::simple_filters::DeltaFilter::jump ( ) const

References jump_.

Referenced by parse_my_tag(), and unbind().

void protocols::simple_filters::DeltaFilter::jump ( core::Size const j)

References jump_.

bool protocols::simple_filters::DeltaFilter::lower ( ) const

References lower_.

Referenced by apply(), and parse_my_tag().

void protocols::simple_filters::DeltaFilter::lower ( bool const l)

References lower_.

void protocols::simple_filters::DeltaFilter::parse_my_tag	(	utility::tag::TagPtr const	tag,
		protocols::moves::DataMap &	data,
		protocols::filters::Filters_map const &	filters,
		protocols::moves::Movers_map const &	movers,
		core::pose::Pose const &	pose
	)

virtual

Reimplemented from protocols::filters::Filter.

References baseline(), filter(), protocols::moves::DataMap::get(), jump(), lower(), protocols::rosetta_scripts::parse_filter(), protocols::rosetta_scripts::parse_mover(), core::import_pose::pose_from_pdb(), range(), reference_pose_, relax_mover(), relax_unbound(), report_sm(), protocols::rosetta_scripts::saved_reference_pose(), protocols::simple_filters::TR(), unbind(), unbound(), and upper().

core::Real protocols::simple_filters::DeltaFilter::range ( ) const

References range_.

Referenced by apply(), and parse_my_tag().

void protocols::simple_filters::DeltaFilter::range ( core::Real const r)

References range_.

void protocols::simple_filters::DeltaFilter::ref_baseline ( core::Real const rb)

References ref_baseline_.

protocols::moves::MoverOP protocols::simple_filters::DeltaFilter::relax_mover ( ) const

References relax_mover_.

Referenced by baseline(), parse_my_tag(), and unbind().

void protocols::simple_filters::DeltaFilter::relax_mover ( protocols::moves::MoverOP const mover)

References relax_mover_.

bool protocols::simple_filters::DeltaFilter::relax_unbound ( ) const

References relax_unbound_.

Referenced by parse_my_tag(), and unbind().

void protocols::simple_filters::DeltaFilter::relax_unbound ( bool const u)

References relax_unbound_.

void protocols::simple_filters::DeltaFilter::report	(	std::ostream &	out,
		core::pose::Pose const &	pose
	)		const

virtual

Reimplemented from protocols::filters::Filter.

References compute().

core::Real protocols::simple_filters::DeltaFilter::report_sm ( core::pose::Pose const & ) const

virtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute(), and unbind().

Referenced by compute(), and parse_my_tag().

void protocols::simple_filters::DeltaFilter::unbind ( core::pose::Pose & pose) const

private

References protocols::rigid::RigidBodyTransMover::apply(), jump(), relax_mover(), relax_unbound(), protocols::rigid::RigidBodyTransMover::step_size(), and unbound().

Referenced by baseline(), compute(), parse_my_tag(), and report_sm().

bool protocols::simple_filters::DeltaFilter::unbound ( ) const

References unbound_.

Referenced by parse_my_tag(), and unbind().

void protocols::simple_filters::DeltaFilter::unbound ( bool const u)

References unbound_.

bool protocols::simple_filters::DeltaFilter::upper ( ) const

References upper_.

Referenced by apply(), and parse_my_tag().

void protocols::simple_filters::DeltaFilter::upper ( bool const u)

References upper_.

Member Data Documentation

core::Real protocols::simple_filters::DeltaFilter::baseline_

private

Referenced by baseline().

protocols::filters::FilterOP protocols::simple_filters::DeltaFilter::filter_

private

Referenced by baseline(), and filter().

core::Size protocols::simple_filters::DeltaFilter::jump_

private

Referenced by jump().

bool protocols::simple_filters::DeltaFilter::lower_

private

Referenced by lower().

core::Real protocols::simple_filters::DeltaFilter::range_

private

Referenced by range().

core::Real protocols::simple_filters::DeltaFilter::ref_baseline_

mutableprivate

Referenced by baseline(), and ref_baseline().

core::pose::PoseOP protocols::simple_filters::DeltaFilter::reference_pose_

private

Referenced by baseline(), and parse_my_tag().

protocols::moves::MoverOP protocols::simple_filters::DeltaFilter::relax_mover_

private

Referenced by relax_mover().

bool protocols::simple_filters::DeltaFilter::relax_unbound_

private

Referenced by relax_unbound().

bool protocols::simple_filters::DeltaFilter::unbound_

private

Referenced by unbound().

bool protocols::simple_filters::DeltaFilter::upper_

private

Referenced by upper().

The documentation for this class was generated from the following files:

src/protocols/simple_filters/DeltaFilter.hh
src/protocols/simple_filters/DeltaFilter.cc

Private Attributes
protocols::filters::FilterOP	filter_

core::Real	baseline_

core::Real	range_

bool	lower_

bool	upper_

bool	unbound_

bool	relax_unbound_

core::Size	jump_

protocols::moves::MoverOP	relax_mover_

core::pose::PoseOP	reference_pose_

core::Real	ref_baseline_

Public Member Functions

Private Types

Private Member Functions

Private Attributes

Additional Inherited Members

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation