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AntibodyModelerProtocol.cc File Reference

Build a homology model of an antibody2. More...

#include <protocols/jobdist/JobDistributors.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/chemical/ResidueSelector.hh>
#include <core/chemical/VariantType.hh>
#include <core/io/pdb/pose_io.hh>
#include <core/io/silent/SilentStruct.hh>
#include <core/io/silent/SilentStructFactory.hh>
#include <core/pack/rotamer_set/UnboundRotamersOperation.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/pack/dunbrack/RotamerConstraint.hh>
#include <core/pack/task/operation/TaskOperations.hh>
#include <core/pose/PDBInfo.hh>
#include <core/pose/util.hh>
#include <core/scoring/Energies.hh>
#include <core/scoring/ScoreType.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/constraints/ConstraintFactory.hh>
#include <core/scoring/constraints/ConstraintIO.hh>
#include <core/import_pose/import_pose.hh>
#include <core/pose/datacache/CacheableDataType.hh>
#include <basic/datacache/BasicDataCache.hh>
#include <basic/datacache/DiagnosticData.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/antibody.OptionKeys.gen.hh>
#include <basic/options/keys/constraints.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/run.OptionKeys.gen.hh>
#include <basic/prof.hh>
#include <basic/Tracer.hh>
#include <protocols/jd2/ScoreMap.hh>
#include <protocols/jd2/JobDistributor.hh>
#include <protocols/jd2/Job.hh>
#include <protocols/jd2/JobOutputter.hh>
#include <protocols/loops/loops_main.hh>
#include <protocols/simple_moves/ConstraintSetMover.hh>
#include <protocols/antibody2/AntibodyUtil.hh>
#include <protocols/antibody2/AntibodyInfo.hh>
#include <protocols/antibody2/AntibodyModelerProtocol.hh>
#include <protocols/antibody2/ModelCDRH3.hh>
#include <protocols/antibody2/CDRsMinPackMin.hh>
#include <protocols/antibody2/RefineOneCDRLoop.hh>
#include <protocols/antibody2/RefineBetaBarrel.hh>
#include <ObjexxFCL/format.hh>
#include <ObjexxFCL/string.functions.hh>

Namespaces

 protocols
 The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
 
 protocols::antibody2
 

Constant Groups

 protocols
 The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
 
 protocols::antibody2
 

Functions

static basic::Tracer TR ("protocols.antibody2.AntibodyModelerProtocol")
 
std::ostream & protocols::antibody2::operator<< (std::ostream &out, const AntibodyModelerProtocol &ab_m)
 

Detailed Description

Build a homology model of an antibody2.

Detailed:
Author
Jianqing Xu ( xubes.nosp@m.t@gm.nosp@m.ail.c.nosp@m.om )

Function Documentation

static basic::Tracer TR ( "protocols.antibody2.AntibodyModelerProtocol"  )
static