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protocols::relax::FastRelax Member List

This is the complete list of members for protocols::relax::FastRelax, including all inherited members.

apply(core::pose::Pose &pose)protocols::relax::FastRelaxvirtual
protocols::relax::RelaxProtocolBase::apply(core::io::serialization::PipeMap &pmap)protocols::moves::Movervirtual
apply_disulfides(core::pose::Pose &pose)protocols::relax::RelaxProtocolBase
batch_apply(std::vector< core::io::silent::SilentStructOP > &input_structs, core::scoring::constraints::ConstraintSetOP input_csts=NULL, core::Real decay_rate=0.5)protocols::relax::FastRelax
cartesian(bool newval)protocols::relax::RelaxProtocolBaseinline
cartesian() const protocols::relax::RelaxProtocolBaseinline
cartesian_protocols::relax::RelaxProtocolBaseprotected
checkpoints_protocols::relax::FastRelaxprivate
clear_info()protocols::moves::Moverinlinevirtual
clone() const protocols::relax::FastRelaxvirtual
cmd_accept_to_best(const core::scoring::ScoreFunctionOP local_scorefxn, core::pose::Pose &pose, core::pose::Pose &best_pose, const core::pose::Pose &start_pose, core::Real &best_score, core::Size &accept_count)protocols::relax::FastRelaxprotected
constrain_coords() const protocols::relax::RelaxProtocolBaseinline
constrain_coords(bool constrain_coords)protocols::relax::RelaxProtocolBaseinline
constrain_coords_protocols::relax::RelaxProtocolBaseprotected
constrain_relax_segments() const protocols::relax::RelaxProtocolBaseinline
constrain_relax_segments(bool constrain_relax_segments)protocols::relax::RelaxProtocolBaseinline
constrain_relax_segments_protocols::relax::RelaxProtocolBaseprotected
constrain_relax_to_native_coords() const protocols::relax::RelaxProtocolBaseinline
constrain_relax_to_native_coords(bool constrain_relax_to_native_coords)protocols::relax::RelaxProtocolBaseinline
constrain_relax_to_native_coords_protocols::relax::RelaxProtocolBaseprotected
constrain_relax_to_start_coords() const protocols::relax::RelaxProtocolBaseinline
constrain_relax_to_start_coords(bool constrain_relax_to_start_coords)protocols::relax::RelaxProtocolBaseinline
constrain_relax_to_start_coords_protocols::relax::RelaxProtocolBaseprotected
coord_constrain_sidechains_protocols::relax::RelaxProtocolBaseprotected
create()protocols::moves::Movervirtual
default_repeats_protocols::relax::FastRelaxprivate
do_minimize(core::pose::Pose &pose, core::Real tolerance, core::kinematics::MoveMapOP local_movemap, core::scoring::ScoreFunctionOP local_scorefxn)protocols::relax::FastRelaxprotected
dry_run() const protocols::relax::RelaxProtocolBaseinline
dumpall_protocols::relax::FastRelaxprivate
explicit_ramp_constraints() const protocols::relax::RelaxProtocolBaseinline
explicit_ramp_constraints_protocols::relax::RelaxProtocolBaseprotected
FastRelax(core::Size standard_repeats=0)protocols::relax::FastRelax
FastRelax(core::scoring::ScoreFunctionOP scorefxn_in, core::Size standard_repeats=0)protocols::relax::FastRelax
FastRelax(core::scoring::ScoreFunctionOP scorefxn_in, std::string const &script_file)protocols::relax::FastRelax
FastRelax(core::scoring::ScoreFunctionOP scorefxn_in, core::Size standard_repeats, const std::string &script_file)protocols::relax::FastRelax
Filters_map typedefprotocols::moves::Mover
force_nonideal_protocols::relax::FastRelaxprivate
fresh_instance() const protocols::relax::RelaxProtocolBaseinlinevirtual
get_additional_output()protocols::moves::Movervirtual
get_current_job() const protocols::moves::Mover
get_current_tag() const protocols::moves::Moverinline
get_input_pose() const protocols::moves::Mover
get_last_move_status() const protocols::moves::Mover
get_movemap()protocols::relax::RelaxProtocolBase
get_name() const protocols::relax::FastRelaxvirtual
get_native_pose() const protocols::moves::Mover
get_scorefxn() const protocols::relax::RelaxProtocolBase
get_scorefxn()protocols::relax::RelaxProtocolBaseprotected
get_task_factory() const protocols::relax::RelaxProtocolBase
get_type() const protocols::moves::Moverinline
info()protocols::moves::Moverinlinevirtual
info() const protocols::moves::Moverinlinevirtual
initialize_movemap(core::pose::Pose const &pose, core::kinematics::MoveMap &movemap)protocols::relax::RelaxProtocolBaseprotected
last_proposal_density_ratio()protocols::moves::Moverinlinevirtual
limit_aroma_chi2() const protocols::relax::RelaxProtocolBaseinline
limit_aroma_chi2_protocols::relax::RelaxProtocolBaseprotected
makeDnaRigid(core::pose::Pose &pose, core::kinematics::MoveMapOP mm)protocols::relax::FastRelax
min_type_protocols::relax::RelaxProtocolBaseprotected
minimize_bond_angles(bool setting)protocols::relax::RelaxProtocolBase
minimize_bond_angles() const protocols::relax::RelaxProtocolBase
minimize_bond_lengths(bool setting)protocols::relax::RelaxProtocolBase
minimize_bond_lengths() const protocols::relax::RelaxProtocolBase
minimize_bondangle_subset(int setting)protocols::relax::RelaxProtocolBase
minimize_bondangle_subset() const protocols::relax::RelaxProtocolBase
minimize_bondlength_subset(int setting)protocols::relax::RelaxProtocolBase
minimize_bondlength_subset() const protocols::relax::RelaxProtocolBase
movemap_tag_protocols::relax::FastRelaxprivate
Mover()protocols::moves::Mover
Mover(std::string const &type_name)protocols::moves::Mover
Mover(Mover const &other)protocols::moves::Mover
name()protocols::moves::Moverinlinestatic
operator=(Mover const &other)protocols::moves::Mover
output_debug_structure(core::pose::Pose &pose, std::string prefix)protocols::relax::RelaxProtocolBaseprotected
parent typedefprotocols::relax::RelaxProtocolBase
parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, protocols::moves::MoverCacheSP cache)protocols::relax::FastRelaxvirtual
parse_my_tag(utility::tag::TagPtr const tag, protocols::moves::DataMap &data, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)protocols::relax::FastRelaxvirtual
parse_state(SerializableState const &state)protocols::moves::Movervirtual
Pose typedefprotocols::moves::Mover
PoseCOP typedefprotocols::moves::Mover
ramady_protocols::relax::FastRelaxprivate
ramady_cutoff_protocols::relax::FastRelaxprivate
ramady_force_protocols::relax::FastRelaxprivate
ramady_num_rebuild_protocols::relax::FastRelaxprivate
ramady_rms_limit_protocols::relax::FastRelaxprivate
ramp_down_constraints() const protocols::relax::RelaxProtocolBaseinline
ramp_down_constraints(bool ramp_down_constraints)protocols::relax::RelaxProtocolBaseinline
ramp_down_constraints_protocols::relax::RelaxProtocolBaseprotected
read_script_file(const std::string &script_file, core::Size standard_repeats=5)protocols::relax::FastRelaxprivate
register_options()protocols::relax::RelaxProtocolBasestatic
reinitialize_for_each_job() const protocols::moves::Movervirtual
reinitialize_for_new_input() const protocols::moves::Movervirtual
RelaxProtocolBase(core::scoring::ScoreFunctionOP)protocols::relax::RelaxProtocolBase
RelaxProtocolBase(std::string const &movername="RelaxProtocol")protocols::relax::RelaxProtocolBase
RelaxProtocolBase(std::string const &movername, core::scoring::ScoreFunctionOP)protocols::relax::RelaxProtocolBase
repack_protocols::relax::FastRelaxprivate
reset_status()protocols::moves::Mover
save_state(SerializableState &state)protocols::moves::Movervirtual
script_protocols::relax::FastRelaxprivate
script_max_accept_protocols::relax::FastRelaxprivate
set_current_job(protocols::jobdist::BasicJobCOP job)protocols::moves::Mover
set_current_tag(std::string const &new_tag)protocols::moves::Moverinline
set_default_coordinate_settings()protocols::relax::RelaxProtocolBase
set_default_minimization_settings()protocols::relax::RelaxProtocolBase
set_default_movemap()protocols::relax::RelaxProtocolBase
set_defaults()protocols::relax::RelaxProtocolBase
set_dry_run(bool setting)protocols::relax::RelaxProtocolBaseinline
set_force_nonideal(bool val)protocols::relax::FastRelaxinline
set_input_pose(PoseCOP pose)protocols::moves::Movervirtual
set_last_move_status(MoverStatus status)protocols::moves::Moverprotected
set_min_type(std::string min_type)protocols::relax::RelaxProtocolBase
set_movemap(core::kinematics::MoveMapOP movemap)protocols::relax::RelaxProtocolBase
set_native_pose(PoseCOP pose)protocols::moves::Movervirtual
set_scorefxn(core::scoring::ScoreFunctionOP score)protocols::relax::RelaxProtocolBase
set_script_to_batchrelax_default(core::Size standard_repeats=0)protocols::relax::FastRelax
set_task_factory(core::pack::task::TaskFactoryOP taskf)protocols::relax::RelaxProtocolBase
set_to_default()protocols::relax::FastRelax
set_up_constraints(core::pose::Pose &pose, core::kinematics::MoveMap &local_movemap)protocols::relax::RelaxProtocolBaseprotected
Strings typedefprotocols::moves::Mover
symmetric_rmsd_protocols::relax::FastRelaxprivate
TagPtr typedefprotocols::moves::Mover
test_cycles_protocols::relax::FastRelaxprivate
test_move(Pose &pose)protocols::moves::Moverinlinevirtual
type() const protocols::moves::Moverinline
type(const std::string &type_in)protocols::moves::Moverinline
~FastRelax()protocols::relax::FastRelaxvirtual
~Mover()protocols::moves::Movervirtual
~RelaxProtocolBase()protocols::relax::RelaxProtocolBase