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Public Member Functions | List of all members
core::sequence::SWAligner Class Reference

#include <SWAligner.hh>

Inheritance diagram for core::sequence::SWAligner:
Inheritance graph
Collaboration diagram for core::sequence::SWAligner:
Collaboration graph

Public Member Functions

virtual ~SWAligner ()
 dtor More...
virtual SequenceAlignment align (SequenceOP seq_y, SequenceOP seq_x, ScoringSchemeOP ss)
- Public Member Functions inherited from core::sequence::Aligner
 Aligner ()
 ctor More...
virtual ~Aligner ()
 dtor More...
void validate_input (SequenceOP seq_y, SequenceOP seq_x, ScoringSchemeOP ss)
SequenceAlignment traceback (SequenceOP seq_x, SequenceOP seq_y, DP_Matrix matrix, CellOP start)

Constructor & Destructor Documentation

virtual core::sequence::SWAligner::~SWAligner ( )


Member Function Documentation

SequenceAlignment core::sequence::SWAligner::align ( SequenceOP  seq_y,
SequenceOP  seq_x,
ScoringSchemeOP  ss 

The documentation for this class was generated from the following files: