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protocols::sparta::PDB Member List

This is the complete list of members for protocols::sparta::PDB, including all inherited members.

acceptorListprotocols::sparta::PDB
arccos_(float x)protocols::sparta::PDBprivate
ATOMSprotocols::sparta::PDB
AtomSurfaceFullListprotocols::sparta::PDB
AtomSurfacePartListprotocols::sparta::PDB
calc_ElectricField()protocols::sparta::PDB
calc_HN_S2()protocols::sparta::PDB
calcPlane(RingData *ringP)protocols::sparta::PDB
calcSurface(float rad_sol)protocols::sparta::PDB
calcTriangles(double x0, double y0, double z0, double x1, double y1, double z1, double x2, double y2, double z2, int rowStartA[], int rowNo, int quad, int row0, int ind0, int ind1, int row2, int ind2, Vec3 *pointA)protocols::sparta::PDB
collect_HN_S2_and_EF()protocols::sparta::PDB
Conformersprotocols::sparta::PDB
donorListprotocols::sparta::PDB
ElectricFieldprotocols::sparta::PDB
EMPTYprotocols::sparta::PDB
findNeighors(float rad_sol)protocols::sparta::PDB
getBondAngle(Vec3 A, Vec3 B, Vec3 C)protocols::sparta::PDB
getBondAngle(PDB_Entry a, PDB_Entry b, PDB_Entry c)protocols::sparta::PDB
getChi1(int conformerID, int resNum)protocols::sparta::PDB
getChi2(int conformerID, int resNum)protocols::sparta::PDB
getDihedralAngle(PDB_Entry a, PDB_Entry b, PDB_Entry c, PDB_Entry d)protocols::sparta::PDB
getDist(Vec3 A, Vec3 B)protocols::sparta::PDB
getDist(PDB_Entry A, PDB_Entry B)protocols::sparta::PDB
getEntry(int conformerID, int rNum, const std::string &aName)protocols::sparta::PDB
getEntry(int conformerID, int aNum)protocols::sparta::PDB
getField(const std::string &str, int index)protocols::sparta::PDB
getHBondDist(PDB_Entry D)protocols::sparta::PDB
getHBondDist(int resNum, std::string atomName)protocols::sparta::PDB
getOmega(int conformerID, int resNum)protocols::sparta::PDB
getOneAAName(const std::string &a)protocols::sparta::PDB
getOrbitalShift(int conformerID, int resNum, const std::string &aName)protocols::sparta::PDB
getPhi(int conformerID, int resNum)protocols::sparta::PDB
getPsi(int conformerID, int resNum)protocols::sparta::PDB
getThreeAAName(char a)protocols::sparta::PDB
HB_DHO_AngleListprotocols::sparta::PDB
HB_HOA_AngleListprotocols::sparta::PDB
HBDistListprotocols::sparta::PDB
HBEnergyListprotocols::sparta::PDB
HN_S2protocols::sparta::PDB
initHBond(float DIST=3.5, float ANGLE=35)protocols::sparta::PDB
initOrbitalShift()protocols::sparta::PDB
isAcceptor(PDB_Entry A)protocols::sparta::PDB
isDonor(PDB_Entry D)protocols::sparta::PDB
isSSBonded(int conformerID, int resNum)protocols::sparta::PDB
loadPDB(const std::string &fileName)protocols::sparta::PDB
loadPDB(std::istream &file)protocols::sparta::PDB
loadPDB(core::pose::Pose const &pose)protocols::sparta::PDB
loadPDB_Entry(const std::string &str, PDB_Entry &entry)protocols::sparta::PDB
Mat3VecMult(Vec3 v, Mat3 m)protocols::sparta::PDBprivate
NeighborListprotocols::sparta::PDB
PDB()protocols::sparta::PDB
PDB(const std::string &fileName)protocols::sparta::PDB
PDBfileNameprotocols::sparta::PDB
r1protocols::sparta::PDB
residListprotocols::sparta::PDB
residListOneprotocols::sparta::PDB
ResSurfaceFullListprotocols::sparta::PDB
ResSurfacePartListprotocols::sparta::PDB
RingNoprotocols::sparta::PDB
Ringsprotocols::sparta::PDB
rNprotocols::sparta::PDB
sgn(float x)protocols::sparta::PDBprivate
SpherePointNoprotocols::sparta::PDB
SpherePointsprotocols::sparta::PDB
SurfPrecprotocols::sparta::PDB
VDW_RADprotocols::sparta::PDB
Vec3Abs(Vec3 v)protocols::sparta::PDBprivate
Vec3Add(Vec3 v1, Vec3 v2)protocols::sparta::PDBprivate
Vec3Copy(Vec3 v1, Vec3 v2)protocols::sparta::PDBprivate
Vec3Cross(Vec3 v1, Vec3 v2)protocols::sparta::PDBprivate
Vec3DiffAbs(Vec3 v1, Vec3 v2)protocols::sparta::PDBprivate
Vec3Norm(Vec3 v)protocols::sparta::PDBprivate
Vec3Scalar(Vec3 v1, Vec3 v2)protocols::sparta::PDBprivate
Vec3Scale(Vec3 v, float s)protocols::sparta::PDBprivate
Vec3ScaleAdd(Vec3 v1, float s, Vec3 v2)protocols::sparta::PDBprivate
Vec3Sub(Vec3 v1, Vec3 v2)protocols::sparta::PDBprivate
Vec3Zero(Vec3 v)protocols::sparta::PDBprivate