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core::sequence::ChemicalShiftSequence Member List

This is the complete list of members for core::sequence::ChemicalShiftSequence, including all inherited members.

alphabet() const core::sequence::ChemicalShiftSequenceinline
alphabet(utility::vector1< std::string > new_alphabet)core::sequence::ChemicalShiftSequenceinline
alphabet_core::sequence::ChemicalShiftSequenceprivate
append_char(char new_char)core::sequence::Sequence
append_gap()core::sequence::Sequence
at(core::Size pos) const core::sequence::Sequence
check_internals_() const core::sequence::ChemicalShiftSequenceprivate
ChemicalShiftSequence()core::sequence::ChemicalShiftSequenceinline
ChemicalShiftSequence(FileName const &fn)core::sequence::ChemicalShiftSequenceinline
ChemicalShiftSequence(utility::vector1< utility::vector1< core::Real > > cs_prof, std::string const &seq, std::string const &ident, Size start_idx=1)core::sequence::ChemicalShiftSequenceinline
ChemicalShiftSequence(ChemicalShiftSequence const &src)core::sequence::ChemicalShiftSequenceinline
clone() const core::sequence::ChemicalShiftSequenceinlinevirtual
convert_profile_to_probs(core::Real temp=1.0)core::sequence::SequenceProfile
delete_position(core::Size pos)core::sequence::SequenceProfilevirtual
FileName typedefcore::sequence::ChemicalShiftSequenceprivate
gap_char(char gap_char)core::sequence::Sequence
gap_char() const core::sequence::Sequence
generate_from_sequence(Sequence const &seq, std::string matrix="BLOSUM62")core::sequence::SequenceProfilevirtual
global_auto_rescale()core::sequence::SequenceProfile
id(std::string new_id)core::sequence::Sequence
id() const core::sequence::Sequence
insert_char(core::Size pos, char new_char)core::sequence::SequenceProfilevirtual
insert_gap(core::Size pos)core::sequence::Sequence
is_gap(core::Size pos) const core::sequence::Sequence
length() const core::sequence::Sequencevirtual
negative_better() const core::sequence::SequenceProfileinline
negative_better(bool negbet)core::sequence::SequenceProfileinline
operator<(const Sequence &s) const core::sequence::Sequenceinline
operator<<(std::ostream &out, const ChemicalShiftSequence &p)core::sequence::ChemicalShiftSequencefriend
operator=(ChemicalShiftSequence const &rhs)core::sequence::ChemicalShiftSequenceinline
core::sequence::SequenceProfile::operator=(SequenceProfile const &rhs)core::sequence::SequenceProfileinline
core::sequence::Sequence::operator=(Sequence const &rhs)core::sequence::Sequenceinline
operator==(const Sequence &s) const core::sequence::Sequenceinline
operator[](core::Size pos) const core::sequence::Sequence
prof_row(Size pos) const core::sequence::SequenceProfile
prof_row(utility::vector1< Real > const &new_prof_row, core::Size pos)core::sequence::SequenceProfile
profile() const core::sequence::SequenceProfile
profile(utility::vector1< utility::vector1< Real > > const &new_profile)core::sequence::SequenceProfile
read_data(std::istream &in)core::sequence::Sequence
read_from_checkpoint(FileName const &fn, bool negative_better=true)core::sequence::SequenceProfile
read_from_file(FileName const &fn)core::sequence::ChemicalShiftSequencevirtual
rescale(core::Real factor=1)core::sequence::SequenceProfile
resnum(core::Size idx) const core::sequence::Sequence
sequence(std::string sequence)core::sequence::Sequence
sequence() const core::sequence::Sequence
Sequence()core::sequence::Sequenceinline
Sequence(std::string seq, std::string id, core::Size start=1)core::sequence::Sequenceinline
Sequence(core::pose::Pose const &pose)core::sequence::Sequence
Sequence(Sequence const &src)core::sequence::Sequenceinline
SequenceProfile()core::sequence::SequenceProfileinline
SequenceProfile(FileName const &fn)core::sequence::SequenceProfileinline
SequenceProfile(utility::vector1< utility::vector1< core::Real > > prof, std::string const &sequence, std::string const &id, Size start=1, bool negative_better=false)core::sequence::SequenceProfileinline
SequenceProfile(SequenceProfile const &src)core::sequence::SequenceProfileinline
sigma(Size, Size idx)core::sequence::ChemicalShiftSequence
size() const core::sequence::SequenceProfileinline
start(core::Size new_start)core::sequence::Sequence
start() const core::sequence::Sequence
string typedefcore::sequence::ChemicalShiftSequenceprivate
temp() const core::sequence::SequenceProfileinline
to_string() const core::sequence::Sequencevirtual
type() const core::sequence::SequenceProfileinlinevirtual
ungapped_length() const core::sequence::Sequence
ungapped_sequence() const core::sequence::Sequence
width() const core::sequence::SequenceProfile
~ChemicalShiftSequence()core::sequence::ChemicalShiftSequenceinlinevirtual
~Sequence()core::sequence::Sequencevirtual
~SequenceProfile()core::sequence::SequenceProfileinline