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Rosetta 3.5
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Rosetta 3.5
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#include <StructureFeatures.hh>
Public Member Functions | |
| StructureFeatures () | |
| StructureFeatures (StructureFeatures const &src) | |
| virtual | ~StructureFeatures () |
| std::string | type_name () const |
| return string with class name More... | |
| virtual void | write_schema_to_db (utility::sql_database::sessionOP db_session) const |
| generate the table schemas and write them to the database More... | |
| utility::vector1< std::string > | features_reporter_dependencies () const |
| return the set of features reporters that are required to also already be extracted by the time this one is used. More... | |
| boost::uuids::uuid | report_features (utility::vector1< bool > const &relevant_residues, core::Size batch_id, utility::sql_database::sessionOP db_session) |
| collect all the feature data for the pose use More... | |
| core::Size | report_features (core::pose::Pose const &, utility::vector1< bool > const &, boost::uuids::uuid, utility::sql_database::sessionOP) |
| collect all the feature data for the pose More... | |
| boost::uuids::uuid | report_features (utility::vector1< bool > const &relevant_residues, core::Size batch_id, utility::sql_database::sessionOP db_session, std::string const &tag, std::string const &input_tag) |
| collect all the feature data for the pose use This version allows the tag and the input tag to be specificed More... | |
| void | mark_structure_as_sampled (core::Size batch_id, std::string const &tag, std::string const &input_tag, utility::sql_database::sessionOP db_session) |
| void | delete_record (boost::uuids::uuid struct_id, utility::sql_database::sessionOP db_session) |
| void | load_into_pose (utility::sql_database::sessionOP db_session, boost::uuids::uuid struct_id, core::pose::Pose &pose) |
| void | load_tag (utility::sql_database::sessionOP db_session, boost::uuids::uuid struct_id, core::pose::Pose &pose) |
| boost::uuids::uuid | get_struct_id (utility::sql_database::sessionOP db_session, std::string const &tag, core::Size const &protocol_id) |
 Public Member Functions inherited from protocols::features::FeaturesReporter | |
| virtual | ~FeaturesReporter () |
| Automatically generated virtual destructor for class deriving directly from ReferenceCount. More... | |
| virtual std::string | schema () const |
| return sql statements that sets up the appropriate tables to contain the features. This should be removed once everything has been moved to the schema generator More... | |
| core::Size | report_features (core::pose::Pose const &, boost::uuids::uuid, utility::sql_database::sessionOP) |
| collect all the feature data for the pose. More... | |
| virtual void | parse_my_tag (utility::tag::TagPtr const tag, protocols::moves::DataMap &, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &) |
Additional Inherited Members | |
| Protected Member Functions inherited from protocols::features::FeaturesReporter | |
| std::string | find_tag (core::pose::Pose const &pose) const |
| void | delete_records_from_table (std::string const &table_name, boost::uuids::uuid struct_id, utility::sql_database::sessionOP db_session) |
| a helper function for deleting data associated with a given structure from feature database WARNING table_name must be sanitized! More... | |
| protocols::features::StructureFeatures::StructureFeatures | ( | ) |
| protocols::features::StructureFeatures::StructureFeatures | ( | StructureFeatures const & | src) |
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virtual |
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virtual |
Reimplemented from protocols::features::FeaturesReporter.
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return the set of features reporters that are required to also already be extracted by the time this one is used.
Reimplemented from protocols::features::FeaturesReporter.
| boost::uuids::uuid protocols::features::StructureFeatures::get_struct_id | ( | utility::sql_database::sessionOP | db_session, |
| std::string const & | tag, | ||
| core::Size const & | protocol_id | ||
| ) |
References protocols::pack_daemon::error_message.
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virtual |
Reimplemented from protocols::features::FeaturesReporter.
References load_tag().
| void protocols::features::StructureFeatures::load_tag | ( | utility::sql_database::sessionOP | db_session, |
| boost::uuids::uuid | struct_id, | ||
| core::pose::Pose & | pose | ||
| ) |
References protocols::pack_daemon::error_message, and core::pose::tag_into_pose().
Referenced by load_into_pose().
| void protocols::features::StructureFeatures::mark_structure_as_sampled | ( | core::Size | batch_id, |
| std::string const & | tag, | ||
| std::string const & | input_tag, | ||
| utility::sql_database::sessionOP | db_session | ||
| ) |
| boost::uuids::uuid protocols::features::StructureFeatures::report_features | ( | utility::vector1< bool > const & | relevant_residues, |
| core::Size | batch_id, | ||
| utility::sql_database::sessionOP | db_session | ||
| ) |
collect all the feature data for the pose use
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inlinevirtual |
collect all the feature data for the pose
Implements protocols::features::FeaturesReporter.
| boost::uuids::uuid protocols::features::StructureFeatures::report_features | ( | utility::vector1< bool > const & | relevant_residues, |
| core::Size | batch_id, | ||
| utility::sql_database::sessionOP | db_session, | ||
| std::string const & | tag, | ||
| std::string const & | input_tag | ||
| ) |
collect all the feature data for the pose use This version allows the tag and the input tag to be specificed
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virtual |
return string with class name
Reimplemented from protocols::features::FeaturesReporter.
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virtual |
generate the table schemas and write them to the database
Implements protocols::features::FeaturesReporter.
1.8.4