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protocols::features::JobDataFeatures Class Reference

#include <JobDataFeatures.hh>

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Public Member Functions

 JobDataFeatures ()
 
 JobDataFeatures (JobDataFeatures const &src)
 
virtual ~JobDataFeatures ()
 
std::string type_name () const
 return string with class name More...
 
virtual void write_schema_to_db (utility::sql_database::sessionOP db_session) const
 generate the table schemas and write them to the database More...
 
utility::vector1< std::string > features_reporter_dependencies () const
 return the set of features reporters that are required to also already be extracted by the time this one is used. More...
 
core::Size report_features (core::pose::Pose const &pose, utility::vector1< bool > const &relevant_residues, boost::uuids::uuid struct_id, utility::sql_database::sessionOP db_session)
 collect all the feature data for the pose More...
 
void load_into_pose (utility::sql_database::sessionOP db_session, boost::uuids::uuid struct_id, core::pose::Pose &pose)
 
void delete_record (boost::uuids::uuid struct_id, utility::sql_database::sessionOP db_session)
 
- Public Member Functions inherited from protocols::features::FeaturesReporter
virtual ~FeaturesReporter ()
 Automatically generated virtual destructor for class deriving directly from ReferenceCount. More...
 
virtual std::string schema () const
 return sql statements that sets up the appropriate tables to contain the features. This should be removed once everything has been moved to the schema generator More...
 
core::Size report_features (core::pose::Pose const &, boost::uuids::uuid, utility::sql_database::sessionOP)
 collect all the feature data for the pose. More...
 
virtual void parse_my_tag (utility::tag::TagPtr const tag, protocols::moves::DataMap &, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)
 

Private Member Functions

void insert_string_rows (boost::uuids::uuid struct_id, utility::sql_database::sessionOP db_session, protocols::jd2::JobCOP job) const
 
void insert_string_string_rows (boost::uuids::uuid struct_id, utility::sql_database::sessionOP db_session, protocols::jd2::JobCOP job) const
 
void insert_string_real_rows (boost::uuids::uuid struct_id, utility::sql_database::sessionOP db_session, protocols::jd2::JobCOP job) const
 
void load_string_data (utility::sql_database::sessionOP db_session, boost::uuids::uuid struct_id, core::pose::Pose &pose)
 
void load_string_string_data (utility::sql_database::sessionOP db_session, boost::uuids::uuid struct_id, core::pose::Pose &pose)
 
void load_string_real_data (utility::sql_database::sessionOP db_session, boost::uuids::uuid struct_id, core::pose::Pose &pose)
 

Additional Inherited Members

- Protected Member Functions inherited from protocols::features::FeaturesReporter
std::string find_tag (core::pose::Pose const &pose) const
 
void delete_records_from_table (std::string const &table_name, boost::uuids::uuid struct_id, utility::sql_database::sessionOP db_session)
 a helper function for deleting data associated with a given structure from feature database WARNING table_name must be sanitized! More...
 

Constructor & Destructor Documentation

protocols::features::JobDataFeatures::JobDataFeatures ( )
protocols::features::JobDataFeatures::JobDataFeatures ( JobDataFeatures const &  src)
protocols::features::JobDataFeatures::~JobDataFeatures ( )
virtual

Member Function Documentation

void protocols::features::JobDataFeatures::delete_record ( boost::uuids::uuid  struct_id,
utility::sql_database::sessionOP  db_session 
)
virtual
utility::vector1< std::string > protocols::features::JobDataFeatures::features_reporter_dependencies ( ) const
virtual

return the set of features reporters that are required to also already be extracted by the time this one is used.

Reimplemented from protocols::features::FeaturesReporter.

void protocols::features::JobDataFeatures::insert_string_real_rows ( boost::uuids::uuid  struct_id,
utility::sql_database::sessionOP  db_session,
protocols::jd2::JobCOP  job 
) const
private

Referenced by report_features().

void protocols::features::JobDataFeatures::insert_string_rows ( boost::uuids::uuid  struct_id,
utility::sql_database::sessionOP  db_session,
protocols::jd2::JobCOP  job 
) const
private

Referenced by report_features().

void protocols::features::JobDataFeatures::insert_string_string_rows ( boost::uuids::uuid  struct_id,
utility::sql_database::sessionOP  db_session,
protocols::jd2::JobCOP  job 
) const
private

Referenced by report_features().

void protocols::features::JobDataFeatures::load_into_pose ( utility::sql_database::sessionOP  db_session,
boost::uuids::uuid  struct_id,
core::pose::Pose pose 
)
virtual
void protocols::features::JobDataFeatures::load_string_data ( utility::sql_database::sessionOP  db_session,
boost::uuids::uuid  struct_id,
core::pose::Pose pose 
)
private
void protocols::features::JobDataFeatures::load_string_real_data ( utility::sql_database::sessionOP  db_session,
boost::uuids::uuid  struct_id,
core::pose::Pose pose 
)
private
void protocols::features::JobDataFeatures::load_string_string_data ( utility::sql_database::sessionOP  db_session,
boost::uuids::uuid  struct_id,
core::pose::Pose pose 
)
private
core::Size protocols::features::JobDataFeatures::report_features ( core::pose::Pose const &  pose,
utility::vector1< bool > const &  relevant_residues,
boost::uuids::uuid  struct_id,
utility::sql_database::sessionOP  db_session 
)
virtual
std::string protocols::features::JobDataFeatures::type_name ( ) const
virtual

return string with class name

Reimplemented from protocols::features::FeaturesReporter.

void protocols::features::JobDataFeatures::write_schema_to_db ( utility::sql_database::sessionOP  db_session) const
virtual

generate the table schemas and write them to the database

Implements protocols::features::FeaturesReporter.


The documentation for this class was generated from the following files: