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core::pack::interaction_graph::LazyNode Member List

This is the complete list of members for core::pack::interaction_graph::LazyNode, including all inherited members.

aa_offsets_for_edges_core::pack::interaction_graph::LazyNodeprivate
aatype_for_state(int state) const core::pack::interaction_graph::LazyNodevirtual
acknowledge_neighbors_partial_state_substitution(int edge_to_altered_neighbor, int other_node_new_, SparseMatrixIndex const &other_node_new_state_sparse_info)core::pack::interaction_graph::LazyNode
acknowledge_neighbors_state_substitution(int edge_to_altered_neighbor, core::PackerEnergy new_edge_energy, int other_node_new_state, SparseMatrixIndex const &other_node_new_state_sparse_info)core::pack::interaction_graph::LazyNodeinline
add_edge(EdgeBase *edge_ptr)core::pack::interaction_graph::NodeBase
add_to_one_body_energies(ObjexxFCL::FArray1< core::PackerEnergy > &energy1b)core::pack::interaction_graph::OnTheFlyNodevirtual
add_to_one_body_energy(int state, core::PackerEnergy energy)core::pack::interaction_graph::OnTheFlyNodevirtual
alt_state_sparse_mat_info_core::pack::interaction_graph::LazyNodeprivate
alternate_state_core::pack::interaction_graph::LazyNodeprivate
alternate_state_is_being_considered_core::pack::interaction_graph::LazyNodeprivate
alternate_state_one_body_energy_core::pack::interaction_graph::LazyNodeprivate
alternate_state_total_energy_core::pack::interaction_graph::LazyNodeprivate
alternate_state_two_body_energies_core::pack::interaction_graph::LazyNodeprivate
assign_state(int new_state)core::pack::interaction_graph::LazyNode
assign_zero_state()core::pack::interaction_graph::LazyNodevirtual
bb_bounding_sphere() const core::pack::interaction_graph::OnTheFlyNodeinlineprotected
BoundingSphere typedefcore::pack::interaction_graph::OnTheFlyNode
calc_deltaEpd(int alternate_state)core::pack::interaction_graph::LazyNodeprotected
commit_considered_substitution()core::pack::interaction_graph::LazyNode
complete_state_assignment()core::pack::interaction_graph::LazyNode
compute_pair_energy_for_current_state(int edge_making_energy_request)core::pack::interaction_graph::LazyNode
compute_rotamer_pair_energy(int edge_making_energy_request, int state_this, int state_other) const core::pack::interaction_graph::OnTheFlyNode
considering_alternate_state() const core::pack::interaction_graph::LazyNodeinlineprotected
count_dynamic_memory() const core::pack::interaction_graph::LazyNodevirtual
count_static_memory() const core::pack::interaction_graph::LazyNodevirtual
curr_state_one_body_energy_core::pack::interaction_graph::LazyNodeprivate
curr_state_sparse_mat_info_core::pack::interaction_graph::LazyNodeprivate
curr_state_total_energy_core::pack::interaction_graph::LazyNodeprivate
curr_state_two_body_energies_core::pack::interaction_graph::LazyNodeprivate
current_state_core::pack::interaction_graph::LazyNodeprivate
depth_first_connected_component_counting()core::pack::interaction_graph::NodeBase
distinguish_backbone_and_sidechain() const core::pack::interaction_graph::OnTheFlyNodeinline
distinguish_backbone_and_sidechain(bool setting)core::pack::interaction_graph::OnTheFlyNode
drop_all_edges()core::pack::interaction_graph::NodeBase
drop_edge(std::list< EdgeBase * >::iterator edge_iterator)core::pack::interaction_graph::NodeBase
edge_list_begin()core::pack::interaction_graph::NodeBase
edge_list_end()core::pack::interaction_graph::NodeBase
edge_matrix_ptrs_core::pack::interaction_graph::LazyNodeprivate
find_edge(int other_node_index) const core::pack::interaction_graph::NodeBase
FixedBBNode(InteractionGraphBase *owner, int node_id, int num_states)core::pack::interaction_graph::FixedBBNodeinline
get_adjacent_lazy_node(int index) const core::pack::interaction_graph::LazyNodeinlineprivate
get_adjacent_lazy_node(int index)core::pack::interaction_graph::LazyNodeinlineprivate
get_adjacent_node(int index) const core::pack::interaction_graph::NodeBaseinline
get_adjacent_node(int index)core::pack::interaction_graph::NodeBaseinline
get_adjacent_otf_node(int index)core::pack::interaction_graph::OnTheFlyNodeinlineprotected
get_adjacent_otf_node(int index) const core::pack::interaction_graph::OnTheFlyNodeinlineprotected
get_alt_pd_energy_total() const core::pack::interaction_graph::LazyNodeinlineprotected
get_alternate_state() const core::pack::interaction_graph::LazyNodeinlineprotected
get_curr_pd_energy_total() const core::pack::interaction_graph::LazyNodeinlineprotected
get_current_state() const core::pack::interaction_graph::LazyNodeinline
get_edge_vector_up_to_date() const core::pack::interaction_graph::NodeBaseinlineprotected
get_incident_edge(int index) const core::pack::interaction_graph::NodeBaseinline
get_incident_edge(int index)core::pack::interaction_graph::NodeBaseinline
get_incident_lazy_edge(int index) const core::pack::interaction_graph::LazyNodeinlineprivate
get_incident_lazy_edge(int index)core::pack::interaction_graph::LazyNodeinlineprivate
get_incident_otf_edge(int edge)core::pack::interaction_graph::OnTheFlyNodeinlineprotected
get_incident_otf_edge(int edge) const core::pack::interaction_graph::OnTheFlyNodeinlineprotected
get_index_of_adjacent_node(int index) const core::pack::interaction_graph::NodeBaseinline
get_lazy_ig_owner() const core::pack::interaction_graph::LazyNodeinlineprivate
get_lazy_ig_owner()core::pack::interaction_graph::LazyNodeinlineprivate
get_node_index() const core::pack::interaction_graph::NodeBaseinline
get_num_aa_types() const core::pack::interaction_graph::OnTheFlyNodeinline
get_num_edges_to_larger_indexed_nodes() const core::pack::interaction_graph::NodeBaseinline
get_num_edges_to_smaller_indexed_nodes() const core::pack::interaction_graph::NodeBaseinline
get_num_incident_edges() const core::pack::interaction_graph::NodeBaseinline
get_num_states() const core::pack::interaction_graph::NodeBase
get_num_states_for_aa_type(int aa_type)core::pack::interaction_graph::OnTheFlyNodeinline
get_num_states_for_aa_types()core::pack::interaction_graph::OnTheFlyNodeinline
get_num_states_for_aa_types() const core::pack::interaction_graph::OnTheFlyNodeinline
get_on_the_fly_owner()core::pack::interaction_graph::OnTheFlyNodeinlineprotected
get_on_the_fly_owner() const core::pack::interaction_graph::OnTheFlyNodeinlineprotected
get_one_body_energy(int state) const core::pack::interaction_graph::OnTheFlyNodeinline
get_one_body_energy_current_state() const core::pack::interaction_graph::LazyNodeinline
get_owner() const core::pack::interaction_graph::NodeBaseinlineprotected
get_owner()core::pack::interaction_graph::NodeBaseinlineprotected
get_rotamer(int state) const core::pack::interaction_graph::OnTheFlyNodeinlineprotected
get_sparse_mat_info_for_curr_state() const core::pack::interaction_graph::LazyNodeinline
get_sparse_mat_info_for_state(int state) const core::pack::interaction_graph::OnTheFlyNodeinline
get_state_offset_for_aatype(int aatype) const core::pack::interaction_graph::OnTheFlyNodeinline
get_totalE() const core::pack::interaction_graph::LazyNodeinlinevirtual
LazyNode(InteractionGraphBase *owner, int node_id, int num_states)core::pack::interaction_graph::LazyNode
LazyNode()core::pack::interaction_graph::LazyNodeprivate
LazyNode(LazyNode const &)core::pack::interaction_graph::LazyNodeprivate
neighbors_curr_state_core::pack::interaction_graph::LazyNodeprivate
neighbors_curr_state_sparse_info_core::pack::interaction_graph::LazyNodeprivate
NodeBase(InteractionGraphBase *, int node_id, int num_states)core::pack::interaction_graph::NodeBase
num_states_for_aa_type_for_higher_indexed_neighbor_core::pack::interaction_graph::LazyNodeprivate
OnTheFlyNode(InteractionGraphBase *owner, int node_id, int num_states)core::pack::interaction_graph::OnTheFlyNode
operator=(LazyNode const &)core::pack::interaction_graph::LazyNodeprivate
partial_assign_state(int new_state)core::pack::interaction_graph::LazyNode
prepare_for_simulated_annealing()core::pack::interaction_graph::LazyNodevirtual
print() const core::pack::interaction_graph::LazyNodevirtual
print_internal_energies() const core::pack::interaction_graph::LazyNode
procrastinated_core::pack::interaction_graph::LazyNodeprivate
project_deltaE_for_substitution(int alternate_state, core::PackerEnergy &prev_node_energy)core::pack::interaction_graph::LazyNodeinline
sc_bounding_sphere(int state) const core::pack::interaction_graph::OnTheFlyNodeinlineprotected
set_alternate_state(int alt)core::pack::interaction_graph::LazyNodeinlineprotected
set_one_body_energy(int state, core::PackerEnergy energy)core::pack::interaction_graph::OnTheFlyNodevirtual
set_rotamers(rotamer_set::RotamerSetCOP rotamers)core::pack::interaction_graph::OnTheFlyNode
state_unassigned() const core::pack::interaction_graph::LazyNodeinlinevirtual
update_edge_vector()core::pack::interaction_graph::NodeBaseprotected
update_internal_energy_sums()core::pack::interaction_graph::LazyNode
update_internal_vectors()core::pack::interaction_graph::LazyNodeprivate
update_one_body_energy(int state, core::PackerEnergy energy)core::pack::interaction_graph::OnTheFlyNodevirtual
zero_one_body_energies()core::pack::interaction_graph::OnTheFlyNodevirtual
zero_one_body_energy(int state)core::pack::interaction_graph::OnTheFlyNodevirtual
~FixedBBNode()core::pack::interaction_graph::FixedBBNodeinlinevirtual
~LazyNode()core::pack::interaction_graph::LazyNodevirtual
~NodeBase()core::pack::interaction_graph::NodeBasevirtual
~OnTheFlyNode()core::pack::interaction_graph::OnTheFlyNodevirtual