core::pack::interaction_graph::LazyNode Member List

This is the complete list of members for core::pack::interaction_graph::LazyNode, including all inherited members.

aa_offsets_for_edges_	core::pack::interaction_graph::LazyNode	private
aatype_for_state(int state) const	core::pack::interaction_graph::LazyNode	virtual
acknowledge_neighbors_partial_state_substitution(int edge_to_altered_neighbor, int other_node_new_, SparseMatrixIndex const &other_node_new_state_sparse_info)	core::pack::interaction_graph::LazyNode
acknowledge_neighbors_state_substitution(int edge_to_altered_neighbor, core::PackerEnergy new_edge_energy, int other_node_new_state, SparseMatrixIndex const &other_node_new_state_sparse_info)	core::pack::interaction_graph::LazyNode	inline
add_edge(EdgeBase *edge_ptr)	core::pack::interaction_graph::NodeBase
add_to_one_body_energies(ObjexxFCL::FArray1< core::PackerEnergy > &energy1b)	core::pack::interaction_graph::OnTheFlyNode	virtual
add_to_one_body_energy(int state, core::PackerEnergy energy)	core::pack::interaction_graph::OnTheFlyNode	virtual
alt_state_sparse_mat_info_	core::pack::interaction_graph::LazyNode	private
alternate_state_	core::pack::interaction_graph::LazyNode	private
alternate_state_is_being_considered_	core::pack::interaction_graph::LazyNode	private
alternate_state_one_body_energy_	core::pack::interaction_graph::LazyNode	private
alternate_state_total_energy_	core::pack::interaction_graph::LazyNode	private
alternate_state_two_body_energies_	core::pack::interaction_graph::LazyNode	private
assign_state(int new_state)	core::pack::interaction_graph::LazyNode
assign_zero_state()	core::pack::interaction_graph::LazyNode	virtual
bb_bounding_sphere() const	core::pack::interaction_graph::OnTheFlyNode	inlineprotected
BoundingSphere typedef	core::pack::interaction_graph::OnTheFlyNode
calc_deltaEpd(int alternate_state)	core::pack::interaction_graph::LazyNode	protected
commit_considered_substitution()	core::pack::interaction_graph::LazyNode
complete_state_assignment()	core::pack::interaction_graph::LazyNode
compute_pair_energy_for_current_state(int edge_making_energy_request)	core::pack::interaction_graph::LazyNode
compute_rotamer_pair_energy(int edge_making_energy_request, int state_this, int state_other) const	core::pack::interaction_graph::OnTheFlyNode
considering_alternate_state() const	core::pack::interaction_graph::LazyNode	inlineprotected
count_dynamic_memory() const	core::pack::interaction_graph::LazyNode	virtual
count_static_memory() const	core::pack::interaction_graph::LazyNode	virtual
curr_state_one_body_energy_	core::pack::interaction_graph::LazyNode	private
curr_state_sparse_mat_info_	core::pack::interaction_graph::LazyNode	private
curr_state_total_energy_	core::pack::interaction_graph::LazyNode	private
curr_state_two_body_energies_	core::pack::interaction_graph::LazyNode	private
current_state_	core::pack::interaction_graph::LazyNode	private
depth_first_connected_component_counting()	core::pack::interaction_graph::NodeBase
distinguish_backbone_and_sidechain() const	core::pack::interaction_graph::OnTheFlyNode	inline
distinguish_backbone_and_sidechain(bool setting)	core::pack::interaction_graph::OnTheFlyNode
drop_all_edges()	core::pack::interaction_graph::NodeBase
drop_edge(std::list< EdgeBase * >::iterator edge_iterator)	core::pack::interaction_graph::NodeBase
edge_list_begin()	core::pack::interaction_graph::NodeBase
edge_list_end()	core::pack::interaction_graph::NodeBase
edge_matrix_ptrs_	core::pack::interaction_graph::LazyNode	private
find_edge(int other_node_index) const	core::pack::interaction_graph::NodeBase
FixedBBNode(InteractionGraphBase *owner, int node_id, int num_states)	core::pack::interaction_graph::FixedBBNode	inline
get_adjacent_lazy_node(int index) const	core::pack::interaction_graph::LazyNode	inlineprivate
get_adjacent_lazy_node(int index)	core::pack::interaction_graph::LazyNode	inlineprivate
get_adjacent_node(int index) const	core::pack::interaction_graph::NodeBase	inline
get_adjacent_node(int index)	core::pack::interaction_graph::NodeBase	inline
get_adjacent_otf_node(int index)	core::pack::interaction_graph::OnTheFlyNode	inlineprotected
get_adjacent_otf_node(int index) const	core::pack::interaction_graph::OnTheFlyNode	inlineprotected
get_alt_pd_energy_total() const	core::pack::interaction_graph::LazyNode	inlineprotected
get_alternate_state() const	core::pack::interaction_graph::LazyNode	inlineprotected
get_curr_pd_energy_total() const	core::pack::interaction_graph::LazyNode	inlineprotected
get_current_state() const	core::pack::interaction_graph::LazyNode	inline
get_edge_vector_up_to_date() const	core::pack::interaction_graph::NodeBase	inlineprotected
get_incident_edge(int index) const	core::pack::interaction_graph::NodeBase	inline
get_incident_edge(int index)	core::pack::interaction_graph::NodeBase	inline
get_incident_lazy_edge(int index) const	core::pack::interaction_graph::LazyNode	inlineprivate
get_incident_lazy_edge(int index)	core::pack::interaction_graph::LazyNode	inlineprivate
get_incident_otf_edge(int edge)	core::pack::interaction_graph::OnTheFlyNode	inlineprotected
get_incident_otf_edge(int edge) const	core::pack::interaction_graph::OnTheFlyNode	inlineprotected
get_index_of_adjacent_node(int index) const	core::pack::interaction_graph::NodeBase	inline
get_lazy_ig_owner() const	core::pack::interaction_graph::LazyNode	inlineprivate
get_lazy_ig_owner()	core::pack::interaction_graph::LazyNode	inlineprivate
get_node_index() const	core::pack::interaction_graph::NodeBase	inline
get_num_aa_types() const	core::pack::interaction_graph::OnTheFlyNode	inline
get_num_edges_to_larger_indexed_nodes() const	core::pack::interaction_graph::NodeBase	inline
get_num_edges_to_smaller_indexed_nodes() const	core::pack::interaction_graph::NodeBase	inline
get_num_incident_edges() const	core::pack::interaction_graph::NodeBase	inline
get_num_states() const	core::pack::interaction_graph::NodeBase
get_num_states_for_aa_type(int aa_type)	core::pack::interaction_graph::OnTheFlyNode	inline
get_num_states_for_aa_types()	core::pack::interaction_graph::OnTheFlyNode	inline
get_num_states_for_aa_types() const	core::pack::interaction_graph::OnTheFlyNode	inline
get_on_the_fly_owner()	core::pack::interaction_graph::OnTheFlyNode	inlineprotected
get_on_the_fly_owner() const	core::pack::interaction_graph::OnTheFlyNode	inlineprotected
get_one_body_energy(int state) const	core::pack::interaction_graph::OnTheFlyNode	inline
get_one_body_energy_current_state() const	core::pack::interaction_graph::LazyNode	inline
get_owner() const	core::pack::interaction_graph::NodeBase	inlineprotected
get_owner()	core::pack::interaction_graph::NodeBase	inlineprotected
get_rotamer(int state) const	core::pack::interaction_graph::OnTheFlyNode	inlineprotected
get_sparse_mat_info_for_curr_state() const	core::pack::interaction_graph::LazyNode	inline
get_sparse_mat_info_for_state(int state) const	core::pack::interaction_graph::OnTheFlyNode	inline
get_state_offset_for_aatype(int aatype) const	core::pack::interaction_graph::OnTheFlyNode	inline
get_totalE() const	core::pack::interaction_graph::LazyNode	inlinevirtual
LazyNode(InteractionGraphBase *owner, int node_id, int num_states)	core::pack::interaction_graph::LazyNode
LazyNode()	core::pack::interaction_graph::LazyNode	private
LazyNode(LazyNode const &)	core::pack::interaction_graph::LazyNode	private
neighbors_curr_state_	core::pack::interaction_graph::LazyNode	private
neighbors_curr_state_sparse_info_	core::pack::interaction_graph::LazyNode	private
NodeBase(InteractionGraphBase *, int node_id, int num_states)	core::pack::interaction_graph::NodeBase
num_states_for_aa_type_for_higher_indexed_neighbor_	core::pack::interaction_graph::LazyNode	private
OnTheFlyNode(InteractionGraphBase *owner, int node_id, int num_states)	core::pack::interaction_graph::OnTheFlyNode
operator=(LazyNode const &)	core::pack::interaction_graph::LazyNode	private
partial_assign_state(int new_state)	core::pack::interaction_graph::LazyNode
prepare_for_simulated_annealing()	core::pack::interaction_graph::LazyNode	virtual
print() const	core::pack::interaction_graph::LazyNode	virtual
print_internal_energies() const	core::pack::interaction_graph::LazyNode
procrastinated_	core::pack::interaction_graph::LazyNode	private
project_deltaE_for_substitution(int alternate_state, core::PackerEnergy &prev_node_energy)	core::pack::interaction_graph::LazyNode	inline
sc_bounding_sphere(int state) const	core::pack::interaction_graph::OnTheFlyNode	inlineprotected
set_alternate_state(int alt)	core::pack::interaction_graph::LazyNode	inlineprotected
set_one_body_energy(int state, core::PackerEnergy energy)	core::pack::interaction_graph::OnTheFlyNode	virtual
set_rotamers(rotamer_set::RotamerSetCOP rotamers)	core::pack::interaction_graph::OnTheFlyNode
state_unassigned() const	core::pack::interaction_graph::LazyNode	inlinevirtual
update_edge_vector()	core::pack::interaction_graph::NodeBase	protected
update_internal_energy_sums()	core::pack::interaction_graph::LazyNode
update_internal_vectors()	core::pack::interaction_graph::LazyNode	private
update_one_body_energy(int state, core::PackerEnergy energy)	core::pack::interaction_graph::OnTheFlyNode	virtual
zero_one_body_energies()	core::pack::interaction_graph::OnTheFlyNode	virtual
zero_one_body_energy(int state)	core::pack::interaction_graph::OnTheFlyNode	virtual
~FixedBBNode()	core::pack::interaction_graph::FixedBBNode	inlinevirtual
~LazyNode()	core::pack::interaction_graph::LazyNode	virtual
~NodeBase()	core::pack::interaction_graph::NodeBase	virtual
~OnTheFlyNode()	core::pack::interaction_graph::OnTheFlyNode	virtual