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LayerDesignOperation.hh File Reference

Design residues with selected amino acids depending on the enviroment: layer. The layer of each residue is assigned as core, boundary, or surface, which are defined by accessible surface of mainchain + CB. If resfile is read before calling this operation, this operation is not applied for the residues defined by PIKAA. More...

#include <core/types.hh>
#include <core/pack/task/operation/TaskOperation.hh>
#include <protocols/flxbb/LayerDesignOperation.fwd.hh>
#include <protocols/toolbox/SelectResiduesByLayer.fwd.hh>
#include <core/pack/task/PackerTask.fwd.hh>
#include <utility/tag/Tag.fwd.hh>
#include <utility/vector1.hh>
#include <string>
#include <map>

Classes

class  protocols::flxbb::LayerDesignOperation
 
class  protocols::flxbb::CombinedTaskOperation
 

Namespaces

 protocols
 The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
 
 protocols::flxbb
 

Constant Groups

 protocols
 The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
 
 protocols::flxbb
 

Typedefs

typedef
utility::pointer::owning_ptr
< CombinedTaskOperation > 
protocols::flxbb::CombinedTaskOperationOP
 

Detailed Description

Design residues with selected amino acids depending on the enviroment: layer. The layer of each residue is assigned as core, boundary, or surface, which are defined by accessible surface of mainchain + CB. If resfile is read before calling this operation, this operation is not applied for the residues defined by PIKAA.

Author
Nobuyasu Koga ( nobuy.nosp@m.asu@.nosp@m.uw.ed.nosp@m.u ) Javier Castellanos (javie.nosp@m.rcv@.nosp@m.uw.ed.nosp@m.u )