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protocols::toolbox::task_operations::ThreadSequenceOperation Class Reference

#include <ThreadSequenceOperation.hh>

Inheritance diagram for protocols::toolbox::task_operations::ThreadSequenceOperation:
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Public Types

typedef RestrictOperationsBase parent
 
- Public Types inherited from protocols::toolbox::task_operations::RestrictOperationsBase
typedef
core::pack::task::operation::TaskOperation 
TaskOperation
 
typedef
core::pack::task::operation::TaskOperationOP 
TaskOperationOP
 
typedef TaskOperation parent
 
- Public Types inherited from core::pack::task::operation::TaskOperation
typedef utility::tag::TagPtr TagPtr
 
typedef pose::Pose Pose
 

Public Member Functions

 ThreadSequenceOperation ()
 
 ThreadSequenceOperation (std::string const seq)
 
virtual ~ThreadSequenceOperation ()
 
virtual TaskOperationOP clone () const
 Create another task operation of the type matching the most-derived version of the class. More...
 
virtual void target_sequence (std::string const seq)
 
virtual std::string target_sequence () const
 
virtual void apply (core::pose::Pose const &, core::pack::task::PackerTask &) const
 Change a packer task in some way. The input pose is the one to which the input task will be later applied. More...
 
virtual void parse_tag (TagPtr)
 Used to parse an xml-like tag to load parameters and properties. More...
 
core::Size start_res () const
 
void start_res (core::Size const s)
 
bool allow_design_around () const
 
void allow_design_around (bool const b)
 
- Public Member Functions inherited from protocols::toolbox::task_operations::RestrictOperationsBase
 RestrictOperationsBase ()
 
virtual ~RestrictOperationsBase ()
 
- Public Member Functions inherited from core::pack::task::operation::TaskOperation
virtual ~TaskOperation ()
 
virtual void parse_def (utility::lua::LuaObject const &def)
 

Private Attributes

std::string target_sequence_
 
core::Size start_res_
 
bool allow_design_around_
 

Additional Inherited Members

- Protected Member Functions inherited from protocols::toolbox::task_operations::RestrictOperationsBase
void run_calculator (core::pose::Pose const &pose, std::string const &calculator, std::string const &calculation, utility::vector1_bool &residues) const
 this is the only real function - it takes a calculator name and calculation, and a PackerTask-compatible vector, and flips booleans in the vector according to the calculator More...
 

Detailed Description

this class is a TaskOperation to prevent repacking of residues not near an interface.

Member Typedef Documentation

Constructor & Destructor Documentation

protocols::toolbox::task_operations::ThreadSequenceOperation::ThreadSequenceOperation ( )

References start_res(), and target_sequence().

Referenced by clone().

protocols::toolbox::task_operations::ThreadSequenceOperation::ThreadSequenceOperation ( std::string const  seq)

References target_sequence().

protocols::toolbox::task_operations::ThreadSequenceOperation::~ThreadSequenceOperation ( )
virtual

Member Function Documentation

bool protocols::toolbox::task_operations::ThreadSequenceOperation::allow_design_around ( ) const
inline

References allow_design_around_.

Referenced by apply(), and parse_tag().

void protocols::toolbox::task_operations::ThreadSequenceOperation::allow_design_around ( bool const  b)
inline
void protocols::toolbox::task_operations::ThreadSequenceOperation::apply ( core::pose::Pose const &  ,
core::pack::task::PackerTask  
) const
virtual
core::pack::task::operation::TaskOperationOP protocols::toolbox::task_operations::ThreadSequenceOperation::clone ( ) const
virtual

Create another task operation of the type matching the most-derived version of the class.

Implements protocols::toolbox::task_operations::RestrictOperationsBase.

References ThreadSequenceOperation().

void protocols::toolbox::task_operations::ThreadSequenceOperation::parse_tag ( TagPtr  tag)
virtual

Used to parse an xml-like tag to load parameters and properties.

Reimplemented from core::pack::task::operation::TaskOperation.

References allow_design_around(), start_res(), target_sequence(), and protocols::TR().

core::Size protocols::toolbox::task_operations::ThreadSequenceOperation::start_res ( ) const

References start_res_.

Referenced by apply(), parse_tag(), and ThreadSequenceOperation().

void protocols::toolbox::task_operations::ThreadSequenceOperation::start_res ( core::Size const  s)

References start_res_.

void protocols::toolbox::task_operations::ThreadSequenceOperation::target_sequence ( std::string const  seq)
virtual
std::string protocols::toolbox::task_operations::ThreadSequenceOperation::target_sequence ( ) const
virtual

Member Data Documentation

bool protocols::toolbox::task_operations::ThreadSequenceOperation::allow_design_around_
private

Referenced by allow_design_around().

core::Size protocols::toolbox::task_operations::ThreadSequenceOperation::start_res_
private

Referenced by start_res().

std::string protocols::toolbox::task_operations::ThreadSequenceOperation::target_sequence_
private

Referenced by apply(), and target_sequence().


The documentation for this class was generated from the following files: