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Rosetta 3.5
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Rosetta 3.5
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This is the complete list of members for protocols::motifs::Motif, including all inherited members.
| apply_check(core::pose::Pose const &pose, Size const pos) const | protocols::motifs::Motif | virtual |
| backward_check(core::conformation::Residue const &check_res) const | protocols::motifs::Motif | virtual |
| backward_jump() const | protocols::motifs::Motif | inline |
| backward_jump_ | protocols::motifs::Motif | private |
| basebaseAtomIDs | protocols::motifs::Motif | privatestatic |
| build_inverted_rotamers(core::pose::Pose &pose, Size const motif_anchor_position, bool use_forward, Size rotamer_build_position=0) const | protocols::motifs::Motif | virtual |
| build_rotamers(core::pose::Pose &pose, Size const rotamer_build_position, bool use_forward, Size const ex_, bool res2=false) const | protocols::motifs::Motif | virtual |
| clone() const | protocols::motifs::Motif | |
| forward_check(core::conformation::Residue const &check_res) const | protocols::motifs::Motif | virtual |
| forward_jump() const | protocols::motifs::Motif | inline |
| forward_jump_ | protocols::motifs::Motif | private |
| has_path() const | protocols::motifs::Motif | inline |
| has_path_ | protocols::motifs::Motif | private |
| has_remark() const | protocols::motifs::Motif | inline |
| has_remark_ | protocols::motifs::Motif | private |
| Motif(std::string const resname1, std::string const res1_atom1, std::string const res1_atom2, std::string const res1_atom3, std::string const resname2, std::string const res2_atom1, std::string const res2_atom2, std::string const res2_atom3, core::kinematics::Jump const &orientation) | protocols::motifs::Motif | |
| Motif(core::pose::Pose const &pose, Size const pdb_residue_position_1, char const pdb_chain_id1, std::string const res1_atom1, std::string const res1_atom2, std::string const res1_atom3, Size const pdb_residue_position_2, char const pdb_chain_id2, std::string const res2_atom1, std::string const res2_atom2, std::string const res2_atom3) | protocols::motifs::Motif | |
| Motif(core::pose::Pose const &pose, Size const pdb_residue_position_1, std::string const res1_atom1, std::string const res1_atom2, std::string const res1_atom3, Size const pdb_residue_position_2, std::string const res2_atom1, std::string const res2_atom2, std::string const res2_atom3) | protocols::motifs::Motif | |
| Motif(core::conformation::Residue const &res1, core::conformation::Residue const &res2) | protocols::motifs::Motif | |
| Motif(core::conformation::Residue const &res1, core::conformation::Residue const &res2, utility::vector1< Size > const res2_atoms) | protocols::motifs::Motif | |
| Motif(std::string const resname1, std::string const res1_atom1, std::string const res1_atom2, std::string const res1_atom3, std::string const res2_atom1, std::string const res2_atom2, std::string const res2_atom3, core::kinematics::Jump const &orientation) | protocols::motifs::Motif | |
| Motif(Motif const &src) | protocols::motifs::Motif | |
| motifAtomIDs | protocols::motifs::Motif | privatestatic |
| operator<<(std::ostream &os, Motif const &mot) | protocols::motifs::Motif | friend |
| path() const | protocols::motifs::Motif | inline |
| path_ | protocols::motifs::Motif | private |
| place_atom(core::conformation::Residue const &fixed, core::conformation::Residue &mobile, core::conformation::Atom &atm, bool one_three=true, std::string const atomtype="C1*") const | protocols::motifs::Motif | virtual |
| place_atom(core::conformation::Residue const &fixed, core::conformation::Residue &mobile, core::conformation::Atom &atm, Size const &res2_atom1_index_in, Size const &res2_atom2_index_in, Size const &res2_atom3_index_in, Size const &atomtype, bool one_three=true) const | protocols::motifs::Motif | virtual |
| place_atom_(core::conformation::Residue const &fixed, core::conformation::Residue &mobile, bool forward, core::conformation::Atom &atm, bool one_three=true, std::string const atomtype="C1*") const | protocols::motifs::Motif | virtual |
| place_atom_(core::conformation::Residue const &fixed, core::conformation::Residue &mobile, bool forward, core::conformation::Atom &atm, Size const &res2_atom1_index_in, Size const &res2_atom2_index_in, Size const &res2_atom3_index_in, Size const &atomtype, bool one_three=true) const | protocols::motifs::Motif | virtual |
| place_atoms(core::conformation::Residue const &fixed, core::conformation::Residue &mobile, utility::vector1< std::string > const &atoms, bool one_three=true) const | protocols::motifs::Motif | virtual |
| place_atoms(core::conformation::Residue const &fixed, core::conformation::Residue &mobile, utility::vector1< Size > const &atoms, Size const &res2_atom1_index_in, Size const &res2_atom2_index_in, Size const &res2_atom3_index_in, bool one_three=true) const | protocols::motifs::Motif | virtual |
| place_atoms_(core::conformation::Residue const &fixed, core::conformation::Residue &mobile, bool forward, utility::vector1< std::string > const &atoms, bool one_three=true) const | protocols::motifs::Motif | virtual |
| place_atoms_(core::conformation::Residue const &fixed, core::conformation::Residue &mobile, bool forward, utility::vector1< Size > const &atoms, Size const &res2_atom1_index_in, Size const &res2_atom2_index_in, Size const &res2_atom3_index_in, bool one_three=true) const | protocols::motifs::Motif | virtual |
| place_residue(core::conformation::Residue const &fixed, core::conformation::Residue &mobile, bool one_three=true) const | protocols::motifs::Motif | virtual |
| place_residue(core::conformation::Residue const &fixed, core::conformation::Residue &mobile, Size const &res2_atom1_index_in, Size const &res2_atom2_index_in, Size const &res2_atom3_index_in, bool one_three=true) const | protocols::motifs::Motif | virtual |
| place_residue_(core::conformation::Residue const &fixed, core::conformation::Residue &mobile, bool forward, bool one_three=true) const | protocols::motifs::Motif | virtual |
| place_residue_(core::conformation::Residue const &fixed, core::conformation::Residue &mobile, bool forward, Size const &res2_atom1_index_in, Size const &res2_atom2_index_in, Size const &res2_atom3_index_in, bool one_three=true) const | protocols::motifs::Motif | virtual |
| print(std::ostream &os) const | protocols::motifs::Motif | virtual |
| print() const | protocols::motifs::Motif | virtual |
| remark() const | protocols::motifs::Motif | inline |
| remark_ | protocols::motifs::Motif | private |
| res1_atom1_index() const | protocols::motifs::Motif | inline |
| res1_atom1_index_ | protocols::motifs::Motif | private |
| res1_atom1_int() const | protocols::motifs::Motif | inline |
| res1_atom1_int_ | protocols::motifs::Motif | private |
| res1_atom1_name() const | protocols::motifs::Motif | inline |
| res1_atom1_name_ | protocols::motifs::Motif | private |
| res1_atom2_index() const | protocols::motifs::Motif | inline |
| res1_atom2_index_ | protocols::motifs::Motif | private |
| res1_atom2_int() const | protocols::motifs::Motif | inline |
| res1_atom2_int_ | protocols::motifs::Motif | private |
| res1_atom2_name() const | protocols::motifs::Motif | inline |
| res1_atom2_name_ | protocols::motifs::Motif | private |
| res1_atom3_index() const | protocols::motifs::Motif | inline |
| res1_atom3_index_ | protocols::motifs::Motif | private |
| res1_atom3_int() const | protocols::motifs::Motif | inline |
| res1_atom3_int_ | protocols::motifs::Motif | private |
| res1_atom3_name() const | protocols::motifs::Motif | inline |
| res1_atom3_name_ | protocols::motifs::Motif | private |
| res2_atom1_index() const | protocols::motifs::Motif | inline |
| res2_atom1_index_ | protocols::motifs::Motif | private |
| res2_atom1_int() const | protocols::motifs::Motif | inline |
| res2_atom1_int_ | protocols::motifs::Motif | private |
| res2_atom1_name() const | protocols::motifs::Motif | inline |
| res2_atom1_name_ | protocols::motifs::Motif | private |
| res2_atom2_index() const | protocols::motifs::Motif | inline |
| res2_atom2_index_ | protocols::motifs::Motif | private |
| res2_atom2_int() const | protocols::motifs::Motif | inline |
| res2_atom2_int_ | protocols::motifs::Motif | private |
| res2_atom2_name() const | protocols::motifs::Motif | inline |
| res2_atom2_name_ | protocols::motifs::Motif | private |
| res2_atom3_index() const | protocols::motifs::Motif | inline |
| res2_atom3_index_ | protocols::motifs::Motif | private |
| res2_atom3_int() const | protocols::motifs::Motif | inline |
| res2_atom3_int_ | protocols::motifs::Motif | private |
| res2_atom3_name() const | protocols::motifs::Motif | inline |
| res2_atom3_name_ | protocols::motifs::Motif | private |
| restype_name1() const | protocols::motifs::Motif | inline |
| restype_name1_ | protocols::motifs::Motif | private |
| restype_name2() const | protocols::motifs::Motif | inline |
| restype_name2_ | protocols::motifs::Motif | private |
| store_path(std::string const &path_in) | protocols::motifs::Motif | |
| store_remark(std::string const &remark_in) | protocols::motifs::Motif | |
| ~Motif() | protocols::motifs::Motif | virtual |
1.8.4