#include <UpstreamBuilder.hh>

Inheritance diagram for protocols::match::upstream::UpstreamBuilder:

Collaboration diagram for protocols::match::upstream::UpstreamBuilder:

Public Types
typedef core::Size	Size

typedef core::Vector	Vector

Public Member Functions
virtual	~UpstreamBuilder ()

virtual UpstreamBuilderOP	clone () const =0

virtual std::list< Hit >	build (ScaffoldBuildPoint const &build_point) const =0
	Iterate across possible conformations for the upstream half of the hit, and for each (non-colliding) conformation, invoke build on the downstream algorithm. Return a list of hits. More...

virtual void	recover_hit (Hit const &hit, ScaffoldBuildPoint const &build_point, UpstreamResidueProcessor &processor) const =0
	Reconstruct the upstream conformation for a hit and pass that conformation to an upstream residue processor. More...

virtual void	recover_hits (std::list< Hit >::const_iterator hits_begin, std::list< Hit >::const_iterator hits_end, ScaffoldBuildPoint const &build_point, UpstreamResidueProcessor &processor) const =0
	Reconstruct the upstream conformation for a set of hits and pass their conformations to an upstream residue processor. More...

virtual Size	n_restypes_to_build () const =0

virtual core::chemical::ResidueTypeCOP	restype (Size which_restype) const =0

virtual bool	compatible (Hit const &my_hit, ScaffoldBuildPoint const &build_point_mine, UpstreamBuilder const &other, Hit const &other_hit, ScaffoldBuildPoint const &build_point_other, bool first_dispatch=true) const

virtual bool	compatible (Hit const &my_hit, ScaffoldBuildPoint const &build_point_mine, ProteinUpstreamBuilder const &other, Hit const &other_hit, ScaffoldBuildPoint const &build_point_other, bool first_dispatch=true) const

void	set_bb_grid (BumpGridCOP bbgrid)

Protected Member Functions
BumpGrid const &	bbgrid () const

Private Attributes
BumpGridCOP	bbgrid_

Member Typedef Documentation

typedef core::Size protocols::match::upstream::UpstreamBuilder::Size

typedef core::Vector protocols::match::upstream::UpstreamBuilder::Vector

Constructor & Destructor Documentation

protocols::match::upstream::UpstreamBuilder::~UpstreamBuilder ( )

virtual

Member Function Documentation

BumpGrid const& protocols::match::upstream::UpstreamBuilder::bbgrid ( ) const

inlineprotected

References bbgrid_.

Referenced by protocols::match::upstream::ProteinUpstreamBuilder::atom_coordinate_unacceptable(), and set_bb_grid().

virtual std::list< Hit > protocols::match::upstream::UpstreamBuilder::build ( ScaffoldBuildPoint const & build_point) const

pure virtual

Iterate across possible conformations for the upstream half of the hit, and for each (non-colliding) conformation, invoke build on the downstream algorithm. Return a list of hits.

Implemented in protocols::match::upstream::ProteinUpstreamBuilder.

virtual UpstreamBuilderOP protocols::match::upstream::UpstreamBuilder::clone ( ) const

pure virtual

Implemented in protocols::match::upstream::ProteinUpstreamBuilder.

bool protocols::match::upstream::UpstreamBuilder::compatible	(	Hit const &	my_hit,
		ScaffoldBuildPoint const &	build_point_mine,
		UpstreamBuilder const &	other,
		Hit const &	other_hit,
		ScaffoldBuildPoint const &	build_point_other,
		bool	first_dispatch = `true`
	)		const

virtual

Reimplemented in protocols::match::upstream::ProteinUpstreamBuilder.

References compatible().

Referenced by compatible(), and protocols::match::upstream::ProteinUpstreamBuilder::compatible().

bool protocols::match::upstream::UpstreamBuilder::compatible	(	Hit const &	my_hit,
		ScaffoldBuildPoint const &	build_point_mine,
		ProteinUpstreamBuilder const &	other,
		Hit const &	other_hit,
		ScaffoldBuildPoint const &	build_point_other,
		bool	first_dispatch = `true`
	)		const

virtual

Reimplemented in protocols::match::upstream::ProteinUpstreamBuilder.

References protocols::match::upstream::ProteinUpstreamBuilder::compatible().

virtual Size protocols::match::upstream::UpstreamBuilder::n_restypes_to_build ( ) const

pure virtual

Implemented in protocols::match::upstream::ProteinUpstreamBuilder.

Referenced by protocols::match::downstream::SecondaryMatcherToUpstreamResidue::reorder_restypes().

virtual void protocols::match::upstream::UpstreamBuilder::recover_hit	(	Hit const &	hit,
		ScaffoldBuildPoint const &	build_point,
		UpstreamResidueProcessor &	processor
	)		const

pure virtual

Reconstruct the upstream conformation for a hit and pass that conformation to an upstream residue processor.

Implemented in protocols::match::upstream::ProteinUpstreamBuilder.

virtual void protocols::match::upstream::UpstreamBuilder::recover_hits	(	std::list< Hit >::const_iterator	hits_begin,
		std::list< Hit >::const_iterator	hits_end,
		ScaffoldBuildPoint const &	build_point,
		UpstreamResidueProcessor &	processor
	)		const