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Public Member Functions | Private Attributes | List of all members
protocols::simple_filters::InterfaceSasaFilter Class Reference

#include <InterfaceSasaFilter.hh>

Inheritance diagram for protocols::simple_filters::InterfaceSasaFilter:
Inheritance graph
Collaboration diagram for protocols::simple_filters::InterfaceSasaFilter:
Collaboration graph

Public Member Functions

 InterfaceSasaFilter ()
 InterfaceSasaFilter (core::Real const lower_threshold, bool const hydrophobic=false, bool const polar=false, core::Real const upper_threshold=100000000.0, std::string const sym_dof_names="")
bool apply (core::pose::Pose const &pose) const
 Returns true if the given pose passes the filter, false otherwise. More...
void report (std::ostream &out, core::pose::Pose const &pose) const
core::Real report_sm (core::pose::Pose const &pose) const
 used to report filter internals through a score or silent file More...
core::Real compute (core::pose::Pose const &pose) const
filters::FilterOP clone () const
filters::FilterOP fresh_instance () const
virtual ~InterfaceSasaFilter ()
void jump (core::Size const jump)
void add_jump (core::Size const jump)
void jumps (utility::vector1< core::Size > const jumps)
void sym_dof_names (std::string const sym_dof_names)
void sym_dof_names (utility::vector1< std::string > const sym_dof_names)
void add_sym_dof_name (std::string const sym_dof_name)
void parse_my_tag (utility::tag::TagPtr const tag, protocols::moves::DataMap &, filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)
void parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)
- Public Member Functions inherited from protocols::filters::Filter
 Filter ()
 Filter (std::string const &)
 Filter (Filter const &)
virtual ~Filter ()
virtual std::string get_type () const
std::string get_user_defined_name () const
void set_user_defined_name (std::string const &name)
virtual void clear ()
 used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
virtual void apply (core::io::serialization::PipeMap &pmap)
virtual void score (core::io::serialization::PipeMap &pmap)
virtual core::Real score (core::pose::Pose &pose)
virtual std::string name () const

Private Attributes

core::Real lower_threshold_
core::Real upper_threshold_
bool hydrophobic_
bool polar_
utility::vector1< core::Sizejumps_
 count only hydrophobics? polars? More...
utility::vector1< std::string > sym_dof_names_

Additional Inherited Members

- Protected Attributes inherited from protocols::filters::Filter
std::string scorename_

Constructor & Destructor Documentation

protocols::simple_filters::InterfaceSasaFilter::InterfaceSasaFilter ( )

References jump().

Referenced by clone(), and fresh_instance().

protocols::simple_filters::InterfaceSasaFilter::InterfaceSasaFilter ( core::Real const  lower_threshold,
bool const  hydrophobic = false,
bool const  polar = false,
core::Real const  upper_threshold = 100000000.0,
std::string const  sym_dof_names = "" 

References jump(), and sym_dof_names().

protocols::simple_filters::InterfaceSasaFilter::~InterfaceSasaFilter ( )

Member Function Documentation

void protocols::simple_filters::InterfaceSasaFilter::add_jump ( core::Size const  jump)

References jumps_.

void protocols::simple_filters::InterfaceSasaFilter::add_sym_dof_name ( std::string const  sym_dof_name)

References sym_dof_names_.

bool protocols::simple_filters::InterfaceSasaFilter::apply ( core::pose::Pose const &  pose) const

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References compute(), and lower_threshold_.

filters::FilterOP protocols::simple_filters::InterfaceSasaFilter::clone ( ) const
core::Real protocols::simple_filters::InterfaceSasaFilter::compute ( core::pose::Pose const &  pose) const
filters::FilterOP protocols::simple_filters::InterfaceSasaFilter::fresh_instance ( ) const
void protocols::simple_filters::InterfaceSasaFilter::jump ( core::Size const  jump)

References jumps_, and sym_dof_names_.

Referenced by InterfaceSasaFilter(), and parse_def().

void protocols::simple_filters::InterfaceSasaFilter::jumps ( utility::vector1< core::Size > const  jumps)
void protocols::simple_filters::InterfaceSasaFilter::parse_def ( utility::lua::LuaObject const &  def,
utility::lua::LuaObject const &  score_fxns,
utility::lua::LuaObject const &  tasks 

Reimplemented from protocols::filters::Filter.

References hydrophobic_, jump(), jumps_, and lower_threshold_.

void protocols::simple_filters::InterfaceSasaFilter::parse_my_tag ( utility::tag::TagPtr const  tag,
protocols::moves::DataMap ,
filters::Filters_map const &  ,
protocols::moves::Movers_map const &  ,
core::pose::Pose const &   

Reimplemented from protocols::filters::Filter.

References core::TR().

void protocols::simple_filters::InterfaceSasaFilter::report ( std::ostream &  out,
core::pose::Pose const &  pose 
) const

Reimplemented from protocols::filters::Filter.

References compute().

core::Real protocols::simple_filters::InterfaceSasaFilter::report_sm ( core::pose::Pose const &  ) const

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute().

void protocols::simple_filters::InterfaceSasaFilter::sym_dof_names ( std::string const  sym_dof_names)
void protocols::simple_filters::InterfaceSasaFilter::sym_dof_names ( utility::vector1< std::string > const  sym_dof_names)

References sym_dof_names(), and sym_dof_names_.

Member Data Documentation

bool protocols::simple_filters::InterfaceSasaFilter::hydrophobic_

Referenced by compute(), and parse_def().

utility::vector1<core::Size> protocols::simple_filters::InterfaceSasaFilter::jumps_

count only hydrophobics? polars?

Referenced by add_jump(), compute(), jump(), jumps(), parse_def(), and sym_dof_names().

core::Real protocols::simple_filters::InterfaceSasaFilter::lower_threshold_

Referenced by apply(), and parse_def().

bool protocols::simple_filters::InterfaceSasaFilter::polar_
utility::vector1<std::string> protocols::simple_filters::InterfaceSasaFilter::sym_dof_names_
core::Real protocols::simple_filters::InterfaceSasaFilter::upper_threshold_

The documentation for this class was generated from the following files: