protocols::flexpack::rotamer_set::FlexbbRotamerSets Member List

This is the complete list of members for protocols::flexpack::rotamer_set::FlexbbRotamerSets, including all inherited members.

backbone_for_moltenres_bbconf(Size moltenres, Size bbconf) const	protocols::flexpack::rotamer_set::FlexbbRotamerSets	inline
backbone_for_resid_bbconf(Size resid, Size bbconf) const	protocols::flexpack::rotamer_set::FlexbbRotamerSets	inline
bbconf_for_rotamer(Size rotamer_id) const	protocols::flexpack::rotamer_set::FlexbbRotamerSets	inline
bbconf_for_rotamer_of_moltenres_	protocols::flexpack::rotamer_set::FlexbbRotamerSets	private
bbconf_for_rotamer_on_moltenres(Size moltenres, Size rotamer_id) const	protocols::flexpack::rotamer_set::FlexbbRotamerSets	inline
build_residue_vector_from_fragment(Pose &pose, core::fragment::FrameCOP frame, Size frag_num, utility::vector1< core::conformation::ResidueOP > &fragment_res)	protocols::flexpack::rotamer_set::FlexbbRotamerSets	protected
build_rotamers(Pose const &pose, ScoreFunction const &sfxn, core::graph::Graph const &flexpack_neighbor_graph)	protocols::flexpack::rotamer_set::FlexbbRotamerSets
compute_one_body_energies_for_otf_ig(Pose const &pose, ScoreFunction const &sfxn, core::graph::GraphCOP flexpack_neighbor_graph, interaction_graph::OTFFlexbbInteractionGraph &flexbb_ig) const	protocols::flexpack::rotamer_set::FlexbbRotamerSets
compute_onebody_interactions_with_background(Size moltenres, Pose const &pose, ScoreFunction const &sfxn, core::graph::GraphCOP flexpack_neighbor_graph, interaction_graph::FlexbbInteractionGraph &flexbb_ig) const	protocols::flexpack::rotamer_set::FlexbbRotamerSets	private
compute_sr_one_body_energies_for_flexsets(Size lowermoltenres, Size uppermoltenres, utility::vector1< utility::vector1< Size > > const &regular_representatives, utility::vector1< utility::vector1< Size > > const &proline_representatives, utility::vector1< utility::vector1< Size > > const &glycine_representatives, Pose const &pose, ScoreFunction const &sfxn, interaction_graph::OTFFlexbbInteractionGraph &flexbb_ig) const	protocols::flexpack::rotamer_set::FlexbbRotamerSets	private
conformations_for_flexible_segments_	protocols::flexpack::rotamer_set::FlexbbRotamerSets	private
determine_res_cb_deviation(Pose const &pose, Size resid) const	protocols::flexpack::rotamer_set::FlexbbRotamerSets
dump_pdbs(core::pose::Pose const &pose, std::string const &filename_base) const	protocols::flexpack::rotamer_set::FlexbbRotamerSets
FlexbbRotamerSets(PackerTaskCOP task)	protocols::flexpack::rotamer_set::FlexbbRotamerSets
flexpack_neighbor_graph(Pose const &pose, ScoreFunction const &sfxn, PackerTaskCOP task) const	protocols::flexpack::rotamer_set::FlexbbRotamerSets
flexsegid_for_moltenres(Size molten_resid) const	protocols::flexpack::rotamer_set::FlexbbRotamerSets	inline
flexsegid_for_res(Size resid) const	protocols::flexpack::rotamer_set::FlexbbRotamerSets	inline
flexsegment_size(Size flex_segment_id) const	protocols::flexpack::rotamer_set::FlexbbRotamerSets	inline
flexsegment_span_	protocols::flexpack::rotamer_set::FlexbbRotamerSets	private
flexsegment_start_moltenresid(Size flex_segment_id) const	protocols::flexpack::rotamer_set::FlexbbRotamerSets	inline
flexsegment_start_resid(Size flex_segment_id) const	protocols::flexpack::rotamer_set::FlexbbRotamerSets	inline
flexsegment_stop_moltenresid(Size flex_segment_id) const	protocols::flexpack::rotamer_set::FlexbbRotamerSets	inline
flexsegment_stop_resid(Size flex_segment_id) const	protocols::flexpack::rotamer_set::FlexbbRotamerSets	inline
global_rotid_start_for_moltenres_in_bbconf(Size moltenres, Size bbconf) const	protocols::flexpack::rotamer_set::FlexbbRotamerSets	inline
local_rotid_for_rotamer(Size rotamer_id) const	protocols::flexpack::rotamer_set::FlexbbRotamerSets	inline
local_rotid_for_rotamer_on_moltenres(Size moltenres, Size rotamer_id) const	protocols::flexpack::rotamer_set::FlexbbRotamerSets	inline
local_rotid_start_for_moltenres_in_bbconf(Size moltenres, Size bbconf) const	protocols::flexpack::rotamer_set::FlexbbRotamerSets	inline
LongRangeTwoBodyEnergy typedef	protocols::flexpack::rotamer_set::FlexbbRotamerSets
moltenres_2_flexseg_	protocols::flexpack::rotamer_set::FlexbbRotamerSets	private
moltenres_2_resid(core::uint) const	protocols::flexpack::rotamer_set::FlexbbRotamerSets	virtual
moltenres_2_resid_	protocols::flexpack::rotamer_set::FlexbbRotamerSets	private
moltenres_for_rotamer(core::uint) const	protocols::flexpack::rotamer_set::FlexbbRotamerSets	virtual
moltenres_for_rotamer_	protocols::flexpack::rotamer_set::FlexbbRotamerSets	private
moltenres_part_of_flexsegment(Size molten_resid) const	protocols::flexpack::rotamer_set::FlexbbRotamerSets	inline
moltenres_rotid_2_rotid(core::uint moltenres, core::uint moltenresrotid) const	protocols::flexpack::rotamer_set::FlexbbRotamerSets	virtual
nbackbone_conformations() const	protocols::flexpack::rotamer_set::FlexbbRotamerSets
nbbconfs_	protocols::flexpack::rotamer_set::FlexbbRotamerSets	private
nbbconfs_for_flexseg(core::Size flex_segment_id) const	protocols::flexpack::rotamer_set::FlexbbRotamerSets	inline
nbbconfs_for_flexseg_	protocols::flexpack::rotamer_set::FlexbbRotamerSets	private
nbbconfs_for_moltenres(core::Size moltenres) const	protocols::flexpack::rotamer_set::FlexbbRotamerSets
nbbconfs_for_res(core::Size resid) const	protocols::flexpack::rotamer_set::FlexbbRotamerSets
nflexible_segments() const	protocols::flexpack::rotamer_set::FlexbbRotamerSets	inline
nmolten_res() const	protocols::flexpack::rotamer_set::FlexbbRotamerSets	inline
nmoltenres() const	protocols::flexpack::rotamer_set::FlexbbRotamerSets	virtual
nmoltenres_	protocols::flexpack::rotamer_set::FlexbbRotamerSets	private
nrotamer_offset_for_moltenres(core::uint) const	protocols::flexpack::rotamer_set::FlexbbRotamerSets	virtual
nrotamers() const	protocols::flexpack::rotamer_set::FlexbbRotamerSets	virtual
nrotamers_	protocols::flexpack::rotamer_set::FlexbbRotamerSets	private
nrotamers_for_moltenres(core::uint) const	protocols::flexpack::rotamer_set::FlexbbRotamerSets	virtual
nrotamers_for_moltenres_	protocols::flexpack::rotamer_set::FlexbbRotamerSets	private
nrotamers_for_moltenres_in_bbconf(Size moltenres, Size bbconf) const	protocols::flexpack::rotamer_set::FlexbbRotamerSets	inline
nrotamers_for_res(Size resid) const	protocols::flexpack::rotamer_set::FlexbbRotamerSets	inline
nrotamers_for_resid_in_bbconf(Size resid, Size bbconf) const	protocols::flexpack::rotamer_set::FlexbbRotamerSets	inline
nrotoffset_for_moltenres_	protocols::flexpack::rotamer_set::FlexbbRotamerSets	private
nrotoffset_for_moltenres_bbconf_	protocols::flexpack::rotamer_set::FlexbbRotamerSets	private
nrots_for_moltenres_bbconf_	protocols::flexpack::rotamer_set::FlexbbRotamerSets	private
num_states_per_backbone_for_moltenres(Size moltenres) const	protocols::flexpack::rotamer_set::FlexbbRotamerSets	inline
PackerEnergy typedef	protocols::flexpack::rotamer_set::FlexbbRotamerSets
PackerTaskCOP typedef	protocols::flexpack::rotamer_set::FlexbbRotamerSets
Pose typedef	protocols::flexpack::rotamer_set::FlexbbRotamerSets
precompute_all_energies(Pose const &pose, ScoreFunction const &sfxn, core::graph::GraphCOP flexpack_neighbor_graph, interaction_graph::PrecomputedFlexbbInteractionGraph &flexbb_ig) const	protocols::flexpack::rotamer_set::FlexbbRotamerSets
precompute_energies(Pose const &pose, ScoreFunction const &sfxn, core::graph::GraphCOP flexpack_neighbor_graph, interaction_graph::FlexbbInteractionGraph &flexbb_ig) const	protocols::flexpack::rotamer_set::FlexbbRotamerSets
res_for_rotamer(core::uint) const	protocols::flexpack::rotamer_set::FlexbbRotamerSets	virtual
res_part_of_flexsegment(Size resid) const	protocols::flexpack::rotamer_set::FlexbbRotamerSets	inline
resid_2_moltenres(core::uint) const	protocols::flexpack::rotamer_set::FlexbbRotamerSets	virtual
resid_2_moltenres_	protocols::flexpack::rotamer_set::FlexbbRotamerSets	private
rotamer(core::uint) const	protocols::flexpack::rotamer_set::FlexbbRotamerSets	virtual
rotamer_for_moltenres(core::uint moltenres_id, core::uint rotamerid) const	protocols::flexpack::rotamer_set::FlexbbRotamerSets	virtual
rotamer_for_residue(Size resid, Size rotindex_on_residue) const	protocols::flexpack::rotamer_set::FlexbbRotamerSets
rotamers_	protocols::flexpack::rotamer_set::FlexbbRotamerSets	private
rotamers_on_same_bbconf(Size moltenres, Size rot1, Size rot2) const	protocols::flexpack::rotamer_set::FlexbbRotamerSets	inline
RotamerSetsBase()	core::pack::rotamer_set::RotamerSetsBase
rotid_on_moltenresidue(core::uint rotid) const	protocols::flexpack::rotamer_set::FlexbbRotamerSets	virtual
rotset_for_moltenres(Size molten_resid, Size bbconf=1) const	protocols::flexpack::rotamer_set::FlexbbRotamerSets
rotset_for_residue(Size resid, Size bbconf=1) const	protocols::flexpack::rotamer_set::FlexbbRotamerSets
ScoreFunction typedef	protocols::flexpack::rotamer_set::FlexbbRotamerSets
set_frames(Pose const &pose, utility::vector1< core::fragment::FrameCOP > const &frames)	protocols::flexpack::rotamer_set::FlexbbRotamerSets
Size typedef	protocols::flexpack::rotamer_set::FlexbbRotamerSets
task_	protocols::flexpack::rotamer_set::FlexbbRotamerSets	private
total_residue() const	protocols::flexpack::rotamer_set::FlexbbRotamerSets	virtual
total_residue_	protocols::flexpack::rotamer_set::FlexbbRotamerSets	private
update_offset_data()	protocols::flexpack::rotamer_set::FlexbbRotamerSets	private
~FlexbbRotamerSets()	protocols::flexpack::rotamer_set::FlexbbRotamerSets	virtual
~RotamerSetsBase()	core::pack::rotamer_set::RotamerSetsBase	virtual