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protocols::flexpack::rotamer_set::FlexbbRotamerSets Member List

This is the complete list of members for protocols::flexpack::rotamer_set::FlexbbRotamerSets, including all inherited members.

backbone_for_moltenres_bbconf(Size moltenres, Size bbconf) const protocols::flexpack::rotamer_set::FlexbbRotamerSetsinline
backbone_for_resid_bbconf(Size resid, Size bbconf) const protocols::flexpack::rotamer_set::FlexbbRotamerSetsinline
bbconf_for_rotamer(Size rotamer_id) const protocols::flexpack::rotamer_set::FlexbbRotamerSetsinline
bbconf_for_rotamer_of_moltenres_protocols::flexpack::rotamer_set::FlexbbRotamerSetsprivate
bbconf_for_rotamer_on_moltenres(Size moltenres, Size rotamer_id) const protocols::flexpack::rotamer_set::FlexbbRotamerSetsinline
build_residue_vector_from_fragment(Pose &pose, core::fragment::FrameCOP frame, Size frag_num, utility::vector1< core::conformation::ResidueOP > &fragment_res)protocols::flexpack::rotamer_set::FlexbbRotamerSetsprotected
build_rotamers(Pose const &pose, ScoreFunction const &sfxn, core::graph::Graph const &flexpack_neighbor_graph)protocols::flexpack::rotamer_set::FlexbbRotamerSets
compute_one_body_energies_for_otf_ig(Pose const &pose, ScoreFunction const &sfxn, core::graph::GraphCOP flexpack_neighbor_graph, interaction_graph::OTFFlexbbInteractionGraph &flexbb_ig) const protocols::flexpack::rotamer_set::FlexbbRotamerSets
compute_onebody_interactions_with_background(Size moltenres, Pose const &pose, ScoreFunction const &sfxn, core::graph::GraphCOP flexpack_neighbor_graph, interaction_graph::FlexbbInteractionGraph &flexbb_ig) const protocols::flexpack::rotamer_set::FlexbbRotamerSetsprivate
compute_sr_one_body_energies_for_flexsets(Size lowermoltenres, Size uppermoltenres, utility::vector1< utility::vector1< Size > > const &regular_representatives, utility::vector1< utility::vector1< Size > > const &proline_representatives, utility::vector1< utility::vector1< Size > > const &glycine_representatives, Pose const &pose, ScoreFunction const &sfxn, interaction_graph::OTFFlexbbInteractionGraph &flexbb_ig) const protocols::flexpack::rotamer_set::FlexbbRotamerSetsprivate
conformations_for_flexible_segments_protocols::flexpack::rotamer_set::FlexbbRotamerSetsprivate
determine_res_cb_deviation(Pose const &pose, Size resid) const protocols::flexpack::rotamer_set::FlexbbRotamerSets
dump_pdbs(core::pose::Pose const &pose, std::string const &filename_base) const protocols::flexpack::rotamer_set::FlexbbRotamerSets
FlexbbRotamerSets(PackerTaskCOP task)protocols::flexpack::rotamer_set::FlexbbRotamerSets
flexpack_neighbor_graph(Pose const &pose, ScoreFunction const &sfxn, PackerTaskCOP task) const protocols::flexpack::rotamer_set::FlexbbRotamerSets
flexsegid_for_moltenres(Size molten_resid) const protocols::flexpack::rotamer_set::FlexbbRotamerSetsinline
flexsegid_for_res(Size resid) const protocols::flexpack::rotamer_set::FlexbbRotamerSetsinline
flexsegment_size(Size flex_segment_id) const protocols::flexpack::rotamer_set::FlexbbRotamerSetsinline
flexsegment_span_protocols::flexpack::rotamer_set::FlexbbRotamerSetsprivate
flexsegment_start_moltenresid(Size flex_segment_id) const protocols::flexpack::rotamer_set::FlexbbRotamerSetsinline
flexsegment_start_resid(Size flex_segment_id) const protocols::flexpack::rotamer_set::FlexbbRotamerSetsinline
flexsegment_stop_moltenresid(Size flex_segment_id) const protocols::flexpack::rotamer_set::FlexbbRotamerSetsinline
flexsegment_stop_resid(Size flex_segment_id) const protocols::flexpack::rotamer_set::FlexbbRotamerSetsinline
global_rotid_start_for_moltenres_in_bbconf(Size moltenres, Size bbconf) const protocols::flexpack::rotamer_set::FlexbbRotamerSetsinline
local_rotid_for_rotamer(Size rotamer_id) const protocols::flexpack::rotamer_set::FlexbbRotamerSetsinline
local_rotid_for_rotamer_on_moltenres(Size moltenres, Size rotamer_id) const protocols::flexpack::rotamer_set::FlexbbRotamerSetsinline
local_rotid_start_for_moltenres_in_bbconf(Size moltenres, Size bbconf) const protocols::flexpack::rotamer_set::FlexbbRotamerSetsinline
LongRangeTwoBodyEnergy typedefprotocols::flexpack::rotamer_set::FlexbbRotamerSets
moltenres_2_flexseg_protocols::flexpack::rotamer_set::FlexbbRotamerSetsprivate
moltenres_2_resid(core::uint) const protocols::flexpack::rotamer_set::FlexbbRotamerSetsvirtual
moltenres_2_resid_protocols::flexpack::rotamer_set::FlexbbRotamerSetsprivate
moltenres_for_rotamer(core::uint) const protocols::flexpack::rotamer_set::FlexbbRotamerSetsvirtual
moltenres_for_rotamer_protocols::flexpack::rotamer_set::FlexbbRotamerSetsprivate
moltenres_part_of_flexsegment(Size molten_resid) const protocols::flexpack::rotamer_set::FlexbbRotamerSetsinline
moltenres_rotid_2_rotid(core::uint moltenres, core::uint moltenresrotid) const protocols::flexpack::rotamer_set::FlexbbRotamerSetsvirtual
nbackbone_conformations() const protocols::flexpack::rotamer_set::FlexbbRotamerSets
nbbconfs_protocols::flexpack::rotamer_set::FlexbbRotamerSetsprivate
nbbconfs_for_flexseg(core::Size flex_segment_id) const protocols::flexpack::rotamer_set::FlexbbRotamerSetsinline
nbbconfs_for_flexseg_protocols::flexpack::rotamer_set::FlexbbRotamerSetsprivate
nbbconfs_for_moltenres(core::Size moltenres) const protocols::flexpack::rotamer_set::FlexbbRotamerSets
nbbconfs_for_res(core::Size resid) const protocols::flexpack::rotamer_set::FlexbbRotamerSets
nflexible_segments() const protocols::flexpack::rotamer_set::FlexbbRotamerSetsinline
nmolten_res() const protocols::flexpack::rotamer_set::FlexbbRotamerSetsinline
nmoltenres() const protocols::flexpack::rotamer_set::FlexbbRotamerSetsvirtual
nmoltenres_protocols::flexpack::rotamer_set::FlexbbRotamerSetsprivate
nrotamer_offset_for_moltenres(core::uint) const protocols::flexpack::rotamer_set::FlexbbRotamerSetsvirtual
nrotamers() const protocols::flexpack::rotamer_set::FlexbbRotamerSetsvirtual
nrotamers_protocols::flexpack::rotamer_set::FlexbbRotamerSetsprivate
nrotamers_for_moltenres(core::uint) const protocols::flexpack::rotamer_set::FlexbbRotamerSetsvirtual
nrotamers_for_moltenres_protocols::flexpack::rotamer_set::FlexbbRotamerSetsprivate
nrotamers_for_moltenres_in_bbconf(Size moltenres, Size bbconf) const protocols::flexpack::rotamer_set::FlexbbRotamerSetsinline
nrotamers_for_res(Size resid) const protocols::flexpack::rotamer_set::FlexbbRotamerSetsinline
nrotamers_for_resid_in_bbconf(Size resid, Size bbconf) const protocols::flexpack::rotamer_set::FlexbbRotamerSetsinline
nrotoffset_for_moltenres_protocols::flexpack::rotamer_set::FlexbbRotamerSetsprivate
nrotoffset_for_moltenres_bbconf_protocols::flexpack::rotamer_set::FlexbbRotamerSetsprivate
nrots_for_moltenres_bbconf_protocols::flexpack::rotamer_set::FlexbbRotamerSetsprivate
num_states_per_backbone_for_moltenres(Size moltenres) const protocols::flexpack::rotamer_set::FlexbbRotamerSetsinline
PackerEnergy typedefprotocols::flexpack::rotamer_set::FlexbbRotamerSets
PackerTaskCOP typedefprotocols::flexpack::rotamer_set::FlexbbRotamerSets
Pose typedefprotocols::flexpack::rotamer_set::FlexbbRotamerSets
precompute_all_energies(Pose const &pose, ScoreFunction const &sfxn, core::graph::GraphCOP flexpack_neighbor_graph, interaction_graph::PrecomputedFlexbbInteractionGraph &flexbb_ig) const protocols::flexpack::rotamer_set::FlexbbRotamerSets
precompute_energies(Pose const &pose, ScoreFunction const &sfxn, core::graph::GraphCOP flexpack_neighbor_graph, interaction_graph::FlexbbInteractionGraph &flexbb_ig) const protocols::flexpack::rotamer_set::FlexbbRotamerSets
res_for_rotamer(core::uint) const protocols::flexpack::rotamer_set::FlexbbRotamerSetsvirtual
res_part_of_flexsegment(Size resid) const protocols::flexpack::rotamer_set::FlexbbRotamerSetsinline
resid_2_moltenres(core::uint) const protocols::flexpack::rotamer_set::FlexbbRotamerSetsvirtual
resid_2_moltenres_protocols::flexpack::rotamer_set::FlexbbRotamerSetsprivate
rotamer(core::uint) const protocols::flexpack::rotamer_set::FlexbbRotamerSetsvirtual
rotamer_for_moltenres(core::uint moltenres_id, core::uint rotamerid) const protocols::flexpack::rotamer_set::FlexbbRotamerSetsvirtual
rotamer_for_residue(Size resid, Size rotindex_on_residue) const protocols::flexpack::rotamer_set::FlexbbRotamerSets
rotamers_protocols::flexpack::rotamer_set::FlexbbRotamerSetsprivate
rotamers_on_same_bbconf(Size moltenres, Size rot1, Size rot2) const protocols::flexpack::rotamer_set::FlexbbRotamerSetsinline
RotamerSetsBase()core::pack::rotamer_set::RotamerSetsBase
rotid_on_moltenresidue(core::uint rotid) const protocols::flexpack::rotamer_set::FlexbbRotamerSetsvirtual
rotset_for_moltenres(Size molten_resid, Size bbconf=1) const protocols::flexpack::rotamer_set::FlexbbRotamerSets
rotset_for_residue(Size resid, Size bbconf=1) const protocols::flexpack::rotamer_set::FlexbbRotamerSets
ScoreFunction typedefprotocols::flexpack::rotamer_set::FlexbbRotamerSets
set_frames(Pose const &pose, utility::vector1< core::fragment::FrameCOP > const &frames)protocols::flexpack::rotamer_set::FlexbbRotamerSets
Size typedefprotocols::flexpack::rotamer_set::FlexbbRotamerSets
task_protocols::flexpack::rotamer_set::FlexbbRotamerSetsprivate
total_residue() const protocols::flexpack::rotamer_set::FlexbbRotamerSetsvirtual
total_residue_protocols::flexpack::rotamer_set::FlexbbRotamerSetsprivate
update_offset_data()protocols::flexpack::rotamer_set::FlexbbRotamerSetsprivate
~FlexbbRotamerSets()protocols::flexpack::rotamer_set::FlexbbRotamerSetsvirtual
~RotamerSetsBase()core::pack::rotamer_set::RotamerSetsBasevirtual