Rosetta 3.5
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core::sequence::PairScoringScheme Member List

This is the complete list of members for core::sequence::PairScoringScheme, including all inherited members.

add_scored_pair(core::Size const res1, core::Size const res2, core::Real const score)core::sequence::PairScoringSchemeinline
clone() const core::sequence::PairScoringSchemeinlinevirtual
gap_extend() const core::sequence::ScoringSchemevirtual
gap_extend(Real const gap_extend)core::sequence::ScoringScheme
gap_open() const core::sequence::ScoringSchemevirtual
gap_open(Real const gap_open)core::sequence::ScoringScheme
is_good(Real const &num)core::sequence::ScoringScheme
pairs() const core::sequence::PairScoringSchemeinline
pairs_core::sequence::PairScoringSchemeprivate
PairScoringScheme()core::sequence::PairScoringSchemeinline
PairScoringScheme(Real gap_open_in, Real gap_extend_in, utility::vector1< utility::vector1< core::Real > > pairs)core::sequence::PairScoringSchemeinline
read_data(utility::io::izstream &)core::sequence::ScoringSchemevirtual
read_from_file(utility::file::FileName const &fn)core::sequence::PairScoringSchemevirtual
score(SequenceOP seq1, SequenceOP seq2, core::Size pos1, core::Size pos2)core::sequence::PairScoringSchemevirtual
core::sequence::ScoringScheme::score(SequenceOP seq1, SequenceOP seq2, Size pos1, Size pos2)=0core::sequence::ScoringSchemepure virtual
ScoringScheme()core::sequence::ScoringScheme
type() const core::sequence::ScoringScheme
type(std::string new_type)core::sequence::ScoringScheme
unimplemented_method_error(std::string const &method_name) const core::sequence::ScoringScheme
~PairScoringScheme()core::sequence::PairScoringSchemeinlinevirtual
~ScoringScheme()core::sequence::ScoringSchemevirtual