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protocols::frag_picker::scores::ScoreEValuator Class Reference

Computes E-Value for a Profile object. More...

#include <ScoreEValuator.hh>

Inheritance diagram for protocols::frag_picker::scores::ScoreEValuator:
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Collaboration diagram for protocols::frag_picker::scores::ScoreEValuator:
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Public Member Functions

 ScoreEValuator (Size priority, Real lowest_acceptable_value, bool use_lowest, sequence::SequenceProfileOP query_profile, sequence::ScoringSchemeOP profile_scoring, Size largest_chunk_size)
 
void do_caching (VallChunkOP)
 
void clean_up ()
 
bool score (FragmentCandidateOP, FragmentScoreMapOP)
 
- Public Member Functions inherited from protocols::frag_picker::scores::ProfileScore
 ProfileScore (Size priority, Real lowest_acceptable_value, bool use_lowest, sequence::SequenceProfileOP query_profile, sequence::ScoringSchemeOP profile_scoring, Size longest_vall_chunk)
 
 ~ProfileScore ()
 
bool cached_score (FragmentCandidateOP, FragmentScoreMapOP)
 
bool describe_score (FragmentCandidateOP f, FragmentScoreMapOP empty_map, std::ostream &out)
 
- Public Member Functions inherited from protocols::frag_picker::scores::CachingScoringMethod
 CachingScoringMethod (Size priority, Real lowest_acceptable_value, bool use_lowest, std::string name)
 
- Public Member Functions inherited from protocols::frag_picker::scores::FragmentScoringMethod
 FragmentScoringMethod (Size priority, Real lowest_acceptable_value, bool use_lowest, std::string name)
 
std::string & get_score_name ()
 Returns a name of this scoring method. More...
 
Size get_id ()
 Returns an integer index assigned to this scoring method by a scoring manager. More...
 
void set_id (Size id)
 Sets a new integer index for this scoring method. More...
 
Size get_priority ()
 Returns a priority of this scoring method. More...
 
Real get_min_allowed_score ()
 Returns the lowest acceptable score value for this scoring method. More...
 
bool get_use_lowest ()
 Returns the boolean choice on using the above lowest acceptable score value. More...
 
void set_min_allowed_score (Real lowest_acceptable_value)
 Sets a new value of the lowest acceptable score. More...
 

Private Attributes

Size max_rand_
 

Additional Inherited Members

- Protected Attributes inherited from protocols::frag_picker::scores::ProfileScore
Matrix scores_
 

Detailed Description

Computes E-Value for a Profile object.

Constructor & Destructor Documentation

protocols::frag_picker::scores::ScoreEValuator::ScoreEValuator ( Size  priority,
Real  lowest_acceptable_value,
bool  use_lowest,
sequence::SequenceProfileOP  query_profile,
sequence::ScoringSchemeOP  profile_scoring,
Size  largest_chunk_size 
)
inline

References max_rand_.

Member Function Documentation

void protocols::frag_picker::scores::ScoreEValuator::clean_up ( )
virtual
void protocols::frag_picker::scores::ScoreEValuator::do_caching ( VallChunkOP  chunk)
virtual
bool protocols::frag_picker::scores::ScoreEValuator::score ( FragmentCandidateOP  f,
FragmentScoreMapOP  empty_map 
)
virtual

Member Data Documentation

Size protocols::frag_picker::scores::ScoreEValuator::max_rand_
private

Referenced by ScoreEValuator().


The documentation for this class was generated from the following files: