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protocols::antibody2::SnugDock Member List

This is the complete list of members for protocols::antibody2::SnugDock, including all inherited members.

add_additional_task_operaration(core::pack::task::operation::TaskOperationOP task_operation)protocols::docking::DockingHighRes
antibody_info_protocols::antibody2::SnugDockprivate
apply(Pose &)protocols::antibody2::SnugDockvirtual
protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap)protocols::moves::Movervirtual
clear_info()protocols::moves::Moverinlinevirtual
clone() const protocols::antibody2::SnugDockvirtual
create()protocols::moves::Movervirtual
DockingHighRes()protocols::docking::DockingHighRes
DockingHighRes(core::Size const rb_jump)protocols::docking::DockingHighRes
DockingHighRes(core::Size const rb_jump, core::scoring::ScoreFunctionOP scorefxn)protocols::docking::DockingHighRes
DockingHighRes(core::Size const rb_jump, core::scoring::ScoreFunctionOP scorefxn, core::scoring::ScoreFunctionOP scorefxn_pack)protocols::docking::DockingHighRes
DockingHighRes(DockJumps const movable_jumps, core::scoring::ScoreFunctionOP scorefxn, core::scoring::ScoreFunctionOP scorefxn_pack)protocols::docking::DockingHighRes
DockingHighRes(DockingHighRes const &old_instance)protocols::docking::DockingHighRes
Filters_map typedefprotocols::moves::Mover
fresh_instance() const protocols::antibody2::SnugDockvirtual
get_additional_output()protocols::moves::Movervirtual
get_additional_task_operarations()protocols::docking::DockingHighRes
get_current_job() const protocols::moves::Mover
get_current_tag() const protocols::moves::Moverinline
get_input_pose() const protocols::moves::Mover
get_last_move_status() const protocols::moves::Mover
get_name() const protocols::antibody2::SnugDockvirtual
get_native_pose() const protocols::moves::Mover
get_type() const protocols::moves::Moverinline
high_resolution_step_protocols::antibody2::SnugDockprivate
ignore_default_task()protocols::docking::DockingHighRes
info()protocols::moves::Moverinlinevirtual
info() const protocols::moves::Moverinlinevirtual
init()protocols::antibody2::SnugDockprivate
init_for_equal_operator_and_copy_constructor(SnugDock &lhs, SnugDock const &rhs)protocols::antibody2::SnugDockprivate
init_options()protocols::antibody2::SnugDockprivate
last_proposal_density_ratio()protocols::moves::Moverinlinevirtual
loop_refinement_method_protocols::antibody2::SnugDockprivate
mc_protocols::antibody2::SnugDockprivate
movable_jumps()protocols::docking::DockingHighResinline
movable_jumps() const protocols::docking::DockingHighResinline
Mover()protocols::moves::Mover
Mover(std::string const &type_name)protocols::moves::Mover
Mover(Mover const &other)protocols::moves::Mover
name()protocols::moves::Moverinlinestatic
number_of_high_resolution_cycles() const protocols::antibody2::SnugDock
number_of_high_resolution_cycles(Size const number_of_high_resolution_cycles)protocols::antibody2::SnugDock
number_of_high_resolution_cycles_protocols::antibody2::SnugDockprivate
operator<<(std::ostream &out, SnugDock const &snugdock)protocols::antibody2::SnugDockfriend
operator=(SnugDock const &rhs)protocols::antibody2::SnugDock
protocols::docking::DockingHighRes::operator=(Mover const &other)protocols::moves::Mover
parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache)protocols::moves::Movervirtual
parse_my_tag(TagPtr const tag, DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose)protocols::moves::Movervirtual
parse_state(SerializableState const &state)protocols::moves::Movervirtual
partners()protocols::docking::DockingHighResinline
Pose typedefprotocols::moves::Mover
PoseCOP typedefprotocols::moves::Mover
pre_minimization_protocols::antibody2::SnugDockprivate
register_options()protocols::antibody2::SnugDockstatic
reinitialize_for_each_job() const protocols::moves::Movervirtual
reinitialize_for_new_input() const protocols::antibody2::SnugDockvirtual
reset_status()protocols::moves::Mover
rt_min()protocols::docking::DockingHighResinline
save_state(SerializableState &state)protocols::moves::Movervirtual
sc_min()protocols::docking::DockingHighResinline
scorefxn() const protocols::docking::DockingHighRes
scorefxn_pack() const protocols::docking::DockingHighRes
set_additional_task_operarations(utility::vector1< core::pack::task::operation::TaskOperationOP > additional_task_operations)protocols::docking::DockingHighRes
set_antibody_info(AntibodyInfoOP antibody_info)protocols::antibody2::SnugDock
set_current_job(protocols::jobdist::BasicJobCOP job)protocols::moves::Mover
set_current_tag(std::string const &new_tag)protocols::moves::Moverinline
set_ignore_default_task(bool ignore_default_task)protocols::docking::DockingHighRes
set_input_pose(PoseCOP pose)protocols::moves::Movervirtual
set_interface_definition_task_operation(protocols::toolbox::task_operations::InterfaceTaskOperationOP interface_definition)protocols::docking::DockingHighRes
set_last_move_status(MoverStatus status)protocols::moves::Moverprotected
set_native_pose(PoseCOP pose)protocols::moves::Movervirtual
set_partners(std::string partners)protocols::docking::DockingHighResinline
set_rt_min(bool rt_min)protocols::docking::DockingHighResinline
set_sc_min(bool sc_min)protocols::docking::DockingHighResinline
set_scorefxn(core::scoring::ScoreFunctionOP scorefxn)protocols::docking::DockingHighRes
set_scorefxn_pack(core::scoring::ScoreFunctionOP scorefxn_pack)protocols::docking::DockingHighRes
set_task_factory(core::pack::task::TaskFactoryCOP tf)protocols::docking::DockingHighRes
setup_objects(Pose const &pose)protocols::antibody2::SnugDockprivate
show(std::ostream &out=std::cout)protocols::antibody2::SnugDock
SnugDock()protocols::antibody2::SnugDock
SnugDock(SnugDock const &rhs)protocols::antibody2::SnugDock
Strings typedefprotocols::moves::Mover
TagPtr typedefprotocols::moves::Mover
task_factory()protocols::docking::DockingHighRes
test_move(Pose &pose)protocols::moves::Moverinlinevirtual
tf2()protocols::docking::DockingHighResprotected
type() const protocols::moves::Moverinline
type(const std::string &type_in)protocols::moves::Moverinline
~DockingHighRes()protocols::docking::DockingHighResvirtual
~Mover()protocols::moves::Movervirtual
~SnugDock()protocols::antibody2::SnugDockvirtual