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protocols::loops::loop_closure::kinematic_closure::KinematicMover Class Reference

A mover class for performing kinematic loop closure on a peptide segment . More...

#include <KinematicMover.hh>

Inheritance diagram for protocols::loops::loop_closure::kinematic_closure::KinematicMover:
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Collaboration diagram for protocols::loops::loop_closure::kinematic_closure::KinematicMover:
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Public Member Functions

 KinematicMover ()
 
 ~KinematicMover ()
 
virtual std::string get_name () const
 Each derived class must specify its name. The class name. More...
 
void set_vary_bondangles (bool vary)
 
bool get_vary_bondangles ()
 
void set_sample_nonpivot_torsions (bool sample)
 
bool get_sample_nonpivot_torsions ()
 
Size start_res () const
 
Size middle_res () const
 
Size end_res () const
 
Size segment_length () const
 
Size loop_begin () const
 
Size loop_end () const
 
core::Real BANGLE_MIN () const
 
core::Real BANGLE_SD () const
 
void set_sweep_nonpivot_torsions (bool sweep)
 
void set_nonpivot_res_to_sweep (utility::vector1< Size > const &resids)
 
void set_nonpivot_bb_torsion_id (utility::vector1< Size > const &bbtorids)
 
void set_sweep_start_angle (utility::vector1< core::Real > const &angles_in_degrees)
 
void set_sweep_step_size (utility::vector1< core::Real > const &angle_steps_in_degrees)
 
void set_sweep_nsteps (utility::vector1< Size > const &nsteps)
 
bool sweep_incomplete () const
 
void set_filters (utility::vector1< protocols::filters::FilterCOP > const &filters_in)
 
void add_filter (protocols::filters::FilterCOP filter)
 
void clear_filters ()
 
virtual void set_rama_check (bool do_rama_check)
 
virtual bool get_rama_check ()
 
virtual void set_hardsphere_bump_check (bool do_bump_check)
 
virtual void set_do_sfxn_eval_every_iteration (bool do_sfxn_eval)
 
virtual bool get_hardsphere_bump_check ()
 
virtual void set_pivots (Size start_res, Size middle_res, Size end_res)
 
virtual void apply (core::pose::Pose &)
 
virtual void set_idealize_loop_first (bool idealize)
 
virtual bool get_idealize_loop_first ()
 
void set_temperature (core::Real temp_in)
 
void set_sfxn (core::scoring::ScoreFunctionCOP sfxn_in)
 
void set_loop_begin_and_end (Size loop_begin, Size loop_end)
 
bool check_rama (core::Real old_rama_score, core::Real new_rama_score)
 
bool last_move_succeeded ()
 
void set_perturber (KinematicPerturberOP perturber_in)
 
core::Real get_bump_overlap_factor () const
 
void set_bump_overlap_factor (core::Real bump_overlap_factor)
 
void update_sequence (utility::vector1< core::chemical::AA > const &sequence)
 Taboo Sampling functions. More...
 
void insert_sampled_torsion_string_into_taboo_map (std::string const &ts)
 
bool is_in_taboo_map (std::string const &ts) const
 
utility::vector1
< core::chemical::AA
get_loop_sequence () const
 
std::string torsion_features_string (core::pose::Pose const &pose) const
 bin torsion angles as described in http://www.ncbi.nlm.nih.gov/pubmed/19646450 generates a string with the torsion angle bins, using uppercase letters as in the publication above for omega ~ 180, and lowercase letters for omega ~ 0; to be used in loop sampling analysis – same as in the LoopMover implementation... More...
 
core::Real frequency_in_taboo_map (core::Size const &pos, char const &torsion_bin) const
 returns the frequency of torsion_bin at position pos in the current taboo map, used for shifting probabilities of sampled torsion bins in later rounds More...
 
- Public Member Functions inherited from protocols::moves::Mover
 Mover ()
 
virtual ~Mover ()
 
virtual MoverSP create ()
 
virtual void apply (core::io::serialization::PipeMap &pmap)
 
virtual void parse_state (SerializableState const &state)
 
virtual void parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache)
 
virtual void save_state (SerializableState &state)
 
 Mover (std::string const &type_name)
 sets the type for a mover; name_ has been removed (2010/05/14) More...
 
 Mover (Mover const &other)
 
Moveroperator= (Mover const &other)
 assignment operator More...
 
virtual core::Real last_proposal_density_ratio ()
 
std::string const & type () const
 
std::string get_current_tag () const
 A tag is a unique identifier used to identify structures produced by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor. More...
 
void set_current_tag (std::string const &new_tag)
 
virtual void set_input_pose (PoseCOP pose)
 setter for poses contained for rms More...
 
virtual void set_native_pose (PoseCOP pose)
 setter for native poses contained for rms -— we should get rid of this method? it is widely used, but a bit unsafe More...
 
PoseCOP get_input_pose () const
 
PoseCOP get_native_pose () const
 
virtual void test_move (Pose &pose)
 : Unit test support function. Apply one move to a given pose. Allows extra test specific functions to be called before applying More...
 
void type (const std::string &type_in)
 
virtual MoverOP clone () const
 clone has to be overridden only if clone invocation is expected. More...
 
virtual void parse_my_tag (TagPtr const tag, DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose)
 Called by MoverFactory when constructing new Movers. Takes care of the specific mover's parsing. More...
 
std::string get_type () const
 
MoverStatus get_last_move_status () const
 end parser interface, start Job Distributor interface///////////// More...
 
void reset_status ()
 resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s. More...
 
virtual core::pose::PoseOP get_additional_output ()
 Mechanism by which a mover may return multiple output poses from a single input pose. More...
 
virtual void clear_info ()
 Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file. More...
 
virtual Stringsinfo ()
 non-const accessor More...
 
virtual Strings const & info () const
 const accessor More...
 
virtual bool reinitialize_for_each_job () const
 this function informs the job distributor (august 08 vintage) whether this object needs to be freshly regenerated on each use. More...
 
virtual bool reinitialize_for_new_input () const
 this function informs the job distributor (august 08 vintage) whether this object needs to be regenerated when the input pose is about to change (for example, if the mover has special code on the first apply() that is only valid for that one input pose). More...
 
virtual MoverOP fresh_instance () const
 this is like clone(), except it generates a new mover object freshly created with the default ctor. This function should be pure virtual but that would disrupt the code base; MAKE SURE YOU DEFINE IT if you want to have your mover be a protocol handed to the job distributor (august 08 vintage). More...
 
void set_current_job (protocols::jobdist::BasicJobCOP job)
 
jobdist::BasicJobCOP get_current_job () const
 

Private Member Functions

bool perform_rama_check (core::pose::Pose const &pose, utility::vector1< core::Real > const &t_ang, utility::vector1< Size > const &pivots, Size const start_res, Size const seg_len)
 
bool perform_rama_check (core::pose::Pose const &pose, utility::vector1< core::Real > const &t_ang, utility::vector1< Size > const &pivots, Size const start_res, Size const middle_res, Size const end_res)
 
bool perform_bump_check (core::pose::Pose const &pose, Size const start_res, Size const end_res)
 
void set_defaults ()
 

Private Attributes

Size start_res_
 
Size middle_res_
 
Size end_res_
 
Size seg_len_
 
Size loop_begin_
 
Size loop_end_
 
KinematicPerturberOP perturber_
 
core::Real idl_C_N_CA_
 
core::Real idl_N_CA_C_
 
core::Real idl_CA_C_N_
 
core::Real idl_C_N_
 
core::Real idl_N_CA_
 
core::Real idl_CA_C_
 
core::Real BANGLE_MEAN_
 
core::Real BANGLE_SD_
 
core::Real BANGLE_MIN_
 
core::Real BANGLE_MAX_
 
core::Real OMEGA_MEAN_
 
core::Real OMEGA_SCALE_FACTOR_
 
core::Real MAX_SAMPLE_ITS_
 
bool vary_bond_angles_
 
bool sample_nonpivot_torsions_
 
bool sweep_nonpivot_torsion_
 
utility::vector1< core::Sizenonpivot_res_to_sweep_
 
utility::vector1< core::Sizesweep_torsion_ids_
 
utility::vector1< core::Realsweep_nonpivot_torsion_starts_
 
utility::vector1< core::Realsweep_step_sizes_
 
utility::LexicographicalIterator sweep_iterator_
 
bool idealize_loop_first_
 
bool do_rama_check_
 
bool do_hardsphere_bump_check_
 
bool do_sfxn_eval_every_iteration_
 
core::scoring::ScoreFunctionCOP sfxn_
 
bool last_move_succeeded_
 
core::Real temperature_
 
core::Real bump_overlap_factor_
 
utility::vector1
< protocols::filters::FilterCOP
filters_
 
std::map< std::string, booltaboo_map_
 
core::Real taboo_map_max_capacity_
 
std::map< utility::vector1
< core::chemical::AA >
, std::map< std::string, bool > > 
taboo_master_map_
 
utility::vector1
< core::chemical::AA
sequence_
 

Additional Inherited Members

- Public Types inherited from protocols::moves::Mover
typedef utility::tag::TagPtr TagPtr
 
typedef core::pose::Pose Pose
 
typedef core::pose::PoseCOP PoseCOP
 
typedef
protocols::filters::Filters_map 
Filters_map
 
typedef std::list< std::string > Strings
 
- Static Public Member Functions inherited from protocols::moves::Mover
static std::string name ()
 
static void register_options ()
 overload this static method if you access options within the mover. these options will end up in -help of your application if users of this mover call register_options. do this recursively! if you use movers within your mover, call their register_options in your register_options() method. More...
 
- Protected Member Functions inherited from protocols::moves::Mover
void set_last_move_status (MoverStatus status)
 nonvirtual setter for MoverStatus last_status_. Protected means that only the mover itself will be able to change its own status. The job distributor (august 08 vintage) is aware of status set with this function and will do what the MoverStatus says. More...
 

Detailed Description

A mover class for performing kinematic loop closure on a peptide segment .

Constructor & Destructor Documentation

protocols::loops::loop_closure::kinematic_closure::KinematicMover::KinematicMover ( )

References perturber_, and set_defaults().

protocols::loops::loop_closure::kinematic_closure::KinematicMover::~KinematicMover ( )

Member Function Documentation

void protocols::loops::loop_closure::kinematic_closure::KinematicMover::add_filter ( protocols::filters::FilterCOP  filter)
inline

References filters_.

void protocols::loops::loop_closure::kinematic_closure::KinematicMover::apply ( core::pose::Pose pose)
virtual
core::Real protocols::loops::loop_closure::kinematic_closure::KinematicMover::BANGLE_MIN ( ) const
inline

References BANGLE_MIN_.

core::Real protocols::loops::loop_closure::kinematic_closure::KinematicMover::BANGLE_SD ( ) const
inline

References BANGLE_SD_.

bool protocols::loops::loop_closure::kinematic_closure::KinematicMover::check_rama ( core::Real  old_rama_score,
core::Real  new_rama_score 
)
void protocols::loops::loop_closure::kinematic_closure::KinematicMover::clear_filters ( )
inline

References filters_.

Size protocols::loops::loop_closure::kinematic_closure::KinematicMover::end_res ( ) const
inline

References end_res_.

Referenced by perform_bump_check(), and set_pivots().

core::Real protocols::loops::loop_closure::kinematic_closure::KinematicMover::frequency_in_taboo_map ( core::Size const &  pos,
char const &  torsion_bin 
) const

returns the frequency of torsion_bin at position pos in the current taboo map, used for shifting probabilities of sampled torsion bins in later rounds

References sequence_, taboo_map_, and protocols::loops::loop_closure::kinematic_closure::TR().

core::Real protocols::loops::loop_closure::kinematic_closure::KinematicMover::get_bump_overlap_factor ( ) const
inline

References bump_overlap_factor_.

bool protocols::loops::loop_closure::kinematic_closure::KinematicMover::get_hardsphere_bump_check ( )
virtual
bool protocols::loops::loop_closure::kinematic_closure::KinematicMover::get_idealize_loop_first ( )
virtual

References idealize_loop_first_.

utility::vector1< core::chemical::AA > protocols::loops::loop_closure::kinematic_closure::KinematicMover::get_loop_sequence ( ) const

References sequence_.

std::string protocols::loops::loop_closure::kinematic_closure::KinematicMover::get_name ( ) const
virtual

Each derived class must specify its name. The class name.

Implements protocols::moves::Mover.

bool protocols::loops::loop_closure::kinematic_closure::KinematicMover::get_rama_check ( )
virtual

References do_rama_check_.

bool protocols::loops::loop_closure::kinematic_closure::KinematicMover::get_sample_nonpivot_torsions ( )
bool protocols::loops::loop_closure::kinematic_closure::KinematicMover::get_vary_bondangles ( )

References vary_bond_angles_.

void protocols::loops::loop_closure::kinematic_closure::KinematicMover::insert_sampled_torsion_string_into_taboo_map ( std::string const &  ts)
bool protocols::loops::loop_closure::kinematic_closure::KinematicMover::is_in_taboo_map ( std::string const &  ts) const

References taboo_map_.

bool protocols::loops::loop_closure::kinematic_closure::KinematicMover::last_move_succeeded ( )

References last_move_succeeded_.

Size protocols::loops::loop_closure::kinematic_closure::KinematicMover::loop_begin ( ) const
inline

References loop_begin_.

Referenced by set_loop_begin_and_end().

Size protocols::loops::loop_closure::kinematic_closure::KinematicMover::loop_end ( ) const
inline

References loop_end_.

Referenced by set_loop_begin_and_end().

Size protocols::loops::loop_closure::kinematic_closure::KinematicMover::middle_res ( ) const
inline

References middle_res_.

Referenced by set_pivots().

bool protocols::loops::loop_closure::kinematic_closure::KinematicMover::perform_bump_check ( core::pose::Pose const &  pose,
Size const  start_res,
Size const  end_res 
)
private
bool protocols::loops::loop_closure::kinematic_closure::KinematicMover::perform_rama_check ( core::pose::Pose const &  pose,
utility::vector1< core::Real > const &  t_ang,
utility::vector1< Size > const &  pivots,
Size const  start_res,
Size const  seg_len 
)
private
bool protocols::loops::loop_closure::kinematic_closure::KinematicMover::perform_rama_check ( core::pose::Pose const &  pose,
utility::vector1< core::Real > const &  t_ang,
utility::vector1< Size > const &  pivots,
Size const  start_res,
Size const  middle_res,
Size const  end_res 
)
private
Size protocols::loops::loop_closure::kinematic_closure::KinematicMover::segment_length ( ) const
inline

References seg_len_.

void protocols::loops::loop_closure::kinematic_closure::KinematicMover::set_bump_overlap_factor ( core::Real  bump_overlap_factor)
inline

References bump_overlap_factor_.

void protocols::loops::loop_closure::kinematic_closure::KinematicMover::set_defaults ( )
private

Referenced by KinematicMover().

void protocols::loops::loop_closure::kinematic_closure::KinematicMover::set_do_sfxn_eval_every_iteration ( bool  do_sfxn_eval)
virtual
void protocols::loops::loop_closure::kinematic_closure::KinematicMover::set_filters ( utility::vector1< protocols::filters::FilterCOP > const &  filters_in)
inline

References filters_.

void protocols::loops::loop_closure::kinematic_closure::KinematicMover::set_hardsphere_bump_check ( bool  do_bump_check)
virtual
void protocols::loops::loop_closure::kinematic_closure::KinematicMover::set_idealize_loop_first ( bool  idealize)
virtual

References idealize_loop_first_.

void protocols::loops::loop_closure::kinematic_closure::KinematicMover::set_loop_begin_and_end ( Size  loop_begin,
Size  loop_end 
)
void protocols::loops::loop_closure::kinematic_closure::KinematicMover::set_nonpivot_bb_torsion_id ( utility::vector1< Size > const &  bbtorids)
void protocols::loops::loop_closure::kinematic_closure::KinematicMover::set_nonpivot_res_to_sweep ( utility::vector1< Size > const &  resids)

This must be set before the other properties (torsion angles, starting angles, step sizes, nsteps) are set.

References nonpivot_res_to_sweep_.

void protocols::loops::loop_closure::kinematic_closure::KinematicMover::set_perturber ( KinematicPerturberOP  perturber_in)

References perturber_.

void protocols::loops::loop_closure::kinematic_closure::KinematicMover::set_pivots ( Size  start_res,
Size  middle_res,
Size  end_res 
)
virtual
void protocols::loops::loop_closure::kinematic_closure::KinematicMover::set_rama_check ( bool  do_rama_check)
virtual

References do_rama_check_.

void protocols::loops::loop_closure::kinematic_closure::KinematicMover::set_sample_nonpivot_torsions ( bool  sample)
void protocols::loops::loop_closure::kinematic_closure::KinematicMover::set_sfxn ( core::scoring::ScoreFunctionCOP  sfxn_in)

References sfxn_.

void protocols::loops::loop_closure::kinematic_closure::KinematicMover::set_sweep_nonpivot_torsions ( bool  sweep)
void protocols::loops::loop_closure::kinematic_closure::KinematicMover::set_sweep_nsteps ( utility::vector1< Size > const &  nsteps)

Initializes the LexicographicalIterator

References nonpivot_res_to_sweep_, and sweep_iterator_.

void protocols::loops::loop_closure::kinematic_closure::KinematicMover::set_sweep_start_angle ( utility::vector1< core::Real > const &  angles_in_degrees)
void protocols::loops::loop_closure::kinematic_closure::KinematicMover::set_sweep_step_size ( utility::vector1< core::Real > const &  angle_steps_in_degrees)
void protocols::loops::loop_closure::kinematic_closure::KinematicMover::set_temperature ( core::Real  temp_in)

References temperature_.

void protocols::loops::loop_closure::kinematic_closure::KinematicMover::set_vary_bondangles ( bool  vary)

References vary_bond_angles_.

Size protocols::loops::loop_closure::kinematic_closure::KinematicMover::start_res ( ) const
inline

References start_res_.

Referenced by set_pivots().

bool protocols::loops::loop_closure::kinematic_closure::KinematicMover::sweep_incomplete ( ) const

returns true as long as the Lexicographical iterator has not covered all angles – useful in a while-loop.

References sweep_iterator_.

std::string protocols::loops::loop_closure::kinematic_closure::KinematicMover::torsion_features_string ( core::pose::Pose const &  pose) const

bin torsion angles as described in http://www.ncbi.nlm.nih.gov/pubmed/19646450 generates a string with the torsion angle bins, using uppercase letters as in the publication above for omega ~ 180, and lowercase letters for omega ~ 0; to be used in loop sampling analysis – same as in the LoopMover implementation...

Author
Amelie Stein
Date
April 26, 2012

References core::conformation::get_torsion_bin(), loop_begin_, loop_end_, core::pose::Pose::omega(), core::pose::Pose::phi(), and core::pose::Pose::psi().

Referenced by apply().

void protocols::loops::loop_closure::kinematic_closure::KinematicMover::update_sequence ( utility::vector1< core::chemical::AA > const &  sequence)

Taboo Sampling functions.

Author
Amelie Stein
Date
Thu May 17 13:23:52 PDT 2012

References perturber_, sequence_, taboo_map_, and taboo_master_map_.

Member Data Documentation

core::Real protocols::loops::loop_closure::kinematic_closure::KinematicMover::BANGLE_MAX_
private
core::Real protocols::loops::loop_closure::kinematic_closure::KinematicMover::BANGLE_MEAN_
private
core::Real protocols::loops::loop_closure::kinematic_closure::KinematicMover::BANGLE_MIN_
private

Referenced by BANGLE_MIN().

core::Real protocols::loops::loop_closure::kinematic_closure::KinematicMover::BANGLE_SD_
private

Referenced by BANGLE_SD().

core::Real protocols::loops::loop_closure::kinematic_closure::KinematicMover::bump_overlap_factor_
private
bool protocols::loops::loop_closure::kinematic_closure::KinematicMover::do_hardsphere_bump_check_
private
bool protocols::loops::loop_closure::kinematic_closure::KinematicMover::do_rama_check_
private

Referenced by get_rama_check(), and set_rama_check().

bool protocols::loops::loop_closure::kinematic_closure::KinematicMover::do_sfxn_eval_every_iteration_
private
Size protocols::loops::loop_closure::kinematic_closure::KinematicMover::end_res_
private

Referenced by apply(), end_res(), and set_pivots().

utility::vector1< protocols::filters::FilterCOP > protocols::loops::loop_closure::kinematic_closure::KinematicMover::filters_
private
bool protocols::loops::loop_closure::kinematic_closure::KinematicMover::idealize_loop_first_
private
core::Real protocols::loops::loop_closure::kinematic_closure::KinematicMover::idl_C_N_
private

Referenced by apply().

core::Real protocols::loops::loop_closure::kinematic_closure::KinematicMover::idl_C_N_CA_
private

Referenced by apply().

core::Real protocols::loops::loop_closure::kinematic_closure::KinematicMover::idl_CA_C_
private

Referenced by apply().

core::Real protocols::loops::loop_closure::kinematic_closure::KinematicMover::idl_CA_C_N_
private

Referenced by apply().

core::Real protocols::loops::loop_closure::kinematic_closure::KinematicMover::idl_N_CA_
private

Referenced by apply().

core::Real protocols::loops::loop_closure::kinematic_closure::KinematicMover::idl_N_CA_C_
private

Referenced by apply().

bool protocols::loops::loop_closure::kinematic_closure::KinematicMover::last_move_succeeded_
private

Referenced by apply(), and last_move_succeeded().

Size protocols::loops::loop_closure::kinematic_closure::KinematicMover::loop_begin_
private
Size protocols::loops::loop_closure::kinematic_closure::KinematicMover::loop_end_
private
core::Real protocols::loops::loop_closure::kinematic_closure::KinematicMover::MAX_SAMPLE_ITS_
private
Size protocols::loops::loop_closure::kinematic_closure::KinematicMover::middle_res_
private

Referenced by apply(), middle_res(), and set_pivots().

utility::vector1< core::Size > protocols::loops::loop_closure::kinematic_closure::KinematicMover::nonpivot_res_to_sweep_
private
core::Real protocols::loops::loop_closure::kinematic_closure::KinematicMover::OMEGA_MEAN_
private

Referenced by apply().

core::Real protocols::loops::loop_closure::kinematic_closure::KinematicMover::OMEGA_SCALE_FACTOR_
private
KinematicPerturberOP protocols::loops::loop_closure::kinematic_closure::KinematicMover::perturber_
private
bool protocols::loops::loop_closure::kinematic_closure::KinematicMover::sample_nonpivot_torsions_
private
Size protocols::loops::loop_closure::kinematic_closure::KinematicMover::seg_len_
private

Referenced by segment_length(), and set_pivots().

utility::vector1< core::chemical::AA > protocols::loops::loop_closure::kinematic_closure::KinematicMover::sequence_
private
core::scoring::ScoreFunctionCOP protocols::loops::loop_closure::kinematic_closure::KinematicMover::sfxn_
private

Referenced by set_sfxn().

Size protocols::loops::loop_closure::kinematic_closure::KinematicMover::start_res_
private

Referenced by apply(), set_pivots(), and start_res().

utility::LexicographicalIterator protocols::loops::loop_closure::kinematic_closure::KinematicMover::sweep_iterator_
private
bool protocols::loops::loop_closure::kinematic_closure::KinematicMover::sweep_nonpivot_torsion_
private
utility::vector1< core::Real > protocols::loops::loop_closure::kinematic_closure::KinematicMover::sweep_nonpivot_torsion_starts_
private

Referenced by set_sweep_start_angle().

utility::vector1< core::Real > protocols::loops::loop_closure::kinematic_closure::KinematicMover::sweep_step_sizes_
private

Referenced by set_sweep_step_size().

utility::vector1< core::Size > protocols::loops::loop_closure::kinematic_closure::KinematicMover::sweep_torsion_ids_
private
std::map< std::string, bool > protocols::loops::loop_closure::kinematic_closure::KinematicMover::taboo_map_
private
core::Real protocols::loops::loop_closure::kinematic_closure::KinematicMover::taboo_map_max_capacity_
private
std::map< utility::vector1< core::chemical::AA >, std::map< std::string, bool > > protocols::loops::loop_closure::kinematic_closure::KinematicMover::taboo_master_map_
private

Referenced by update_sequence().

core::Real protocols::loops::loop_closure::kinematic_closure::KinematicMover::temperature_
private

Referenced by check_rama(), and set_temperature().

bool protocols::loops::loop_closure::kinematic_closure::KinematicMover::vary_bond_angles_
private

The documentation for this class was generated from the following files: