protocols::toolbox::KClusterElement Class Reference

#include <KCluster.hh>

Inheritance diagram for protocols::toolbox::KClusterElement:

Collaboration diagram for protocols::toolbox::KClusterElement:

Public Types
typedef utility::vector1< Size >	ClusterNdxList
typedef utility::vector1< Size >	ClusterTypList
typedef utility::vector1< Real >	ClusterDisList

Public Member Functions
virtual	~KClusterElement ()
	Automatically generated virtual destructor for class deriving directly from ReferenceCount. More...
	KClusterElement ()
	KClusterElement (Size nd)
void	assign_type_data (Size, Size, Real)
	assign a data into a cluster More...
void	add_new_data (Size ndx_data)
	add a new struture ndx to the data_ndx_ More...
void	add_new_cluster (Size ndx_data)
	add a new cluster center's data_ndx More...
void	set_cluster (Size ndx_cluster, Size ndx_data)
	set a cluster center's data_ndx More...
Size	get_type (Size ndx_data) const
	return data's type(local cluster index) More...
Real	get_distance (Size ndx_data) const
	return distance between data and center More...
Size	get_center_ndx (Size ndx_cluster) const
	return cluster center's data_ndx More...
const utility::vector1< Size > &	get_ndx_list () const
	return the data ndx list of this cluster More...
const utility::vector1< Size > &	get_ndx_list (Size c) const
	return the ndx list of sub-cluster More...
KClusterElementOP	get_subcluster (Size nc) const
	return the subcluster More...
Size	ncluster ()
Size	get_cur_ncluster () const
	return current cluster number More...
Size	get_ndata () const
	return current data number More...
Size	get_data_ndx (Size ndx_data) const
	return current data number More...
Real	get_max_distance () const
Size	get_max_dist_ndx () const
void	clear_data ()
	clean the data list More...
void	clear ()
	clean the subcluster's list, open edit mode More...
void	check ()
	check the list, close edit mode More...

Private Attributes
ClusterNdxList	data_ndx_
ClusterTypList	type_list_
ClusterDisList	dist_list_
ClusterNdxList	center_ndx_
utility::vector1 < KClusterElementOP >	subclusters_
Size	n_data_
Real	max_distance_
Size	max_dist_ndx_
bool	edit_mode

Member Typedef Documentation

typedef utility::vector1< Real > protocols::toolbox::KClusterElement::ClusterDisList

typedef utility::vector1< Size > protocols::toolbox::KClusterElement::ClusterNdxList

typedef utility::vector1< Size > protocols::toolbox::KClusterElement::ClusterTypList

Constructor & Destructor Documentation

protocols::toolbox::KClusterElement::~KClusterElement ( )

virtual

Automatically generated virtual destructor for class deriving directly from ReferenceCount.

Auto-generated virtual destructor

protocols::toolbox::KClusterElement::KClusterElement ( )

inline

protocols::toolbox::KClusterElement::KClusterElement ( Size  nd)

inline

Member Function Documentation

void protocols::toolbox::KClusterElement::add_new_cluster ( Size  ndx_data)

inline

add a new cluster center's data_ndx

void protocols::toolbox::KClusterElement::add_new_data ( Size  ndx_data)

inline

add a new struture ndx to the data_ndx_

void protocols::toolbox::KClusterElement::assign_type_data	(	Size	ndx_data,
		Size	ndx_cluster,
		Real	d
	)

assign a data into a cluster

void protocols::toolbox::KClusterElement::check ( )

inline

check the list, close edit mode

void protocols::toolbox::KClusterElement::clear ( )

inline

clean the subcluster's list, open edit mode

void protocols::toolbox::KClusterElement::clear_data ( )

inline

clean the data list

Size protocols::toolbox::KClusterElement::get_center_ndx ( Size  ndx_cluster) const

inline

return cluster center's data_ndx

Size protocols::toolbox::KClusterElement::get_cur_ncluster ( ) const

inline

return current cluster number

Size protocols::toolbox::KClusterElement::get_data_ndx ( Size  ndx_data) const

inline

return current data number

Real protocols::toolbox::KClusterElement::get_distance ( Size  ndx_data) const

inline

return distance between data and center

Size protocols::toolbox::KClusterElement::get_max_dist_ndx ( ) const

inline

Real protocols::toolbox::KClusterElement::get_max_distance ( ) const

inline

Size protocols::toolbox::KClusterElement::get_ndata ( ) const

inline

return current data number

const utility::vector1<Size>& protocols::toolbox::KClusterElement::get_ndx_list ( ) const

inline

return the data ndx list of this cluster

const utility::vector1<Size>& protocols::toolbox::KClusterElement::get_ndx_list ( Size  c) const

inline

return the ndx list of sub-cluster

References core::pack::dunbrack::c.

KClusterElementOP protocols::toolbox::KClusterElement::get_subcluster ( Size  nc) const

inline

return the subcluster

Size protocols::toolbox::KClusterElement::get_type ( Size  ndx_data) const

inline

return data's type(local cluster index)

Size protocols::toolbox::KClusterElement::ncluster ( )

inline

void protocols::toolbox::KClusterElement::set_cluster ( Size  ndx_cluster, Size  ndx_data  )

inline

set a cluster center's data_ndx

Member Data Documentation

ClusterNdxList protocols::toolbox::KClusterElement::center_ndx_

private

ClusterNdxList protocols::toolbox::KClusterElement::data_ndx_

private

ClusterDisList protocols::toolbox::KClusterElement::dist_list_

private

bool protocols::toolbox::KClusterElement::edit_mode

private

Size protocols::toolbox::KClusterElement::max_dist_ndx_

private

Real protocols::toolbox::KClusterElement::max_distance_

private

Size protocols::toolbox::KClusterElement::n_data_

private

utility::vector1< KClusterElementOP > protocols::toolbox::KClusterElement::subclusters_

private

ClusterTypList protocols::toolbox::KClusterElement::type_list_

private

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The documentation for this class was generated from the following files:

• src/protocols/toolbox/KCluster.hh
• src/protocols/toolbox/KCluster.cc