| apply(core::pose::Pose &more_cut, core::pose::Pose &less_cut) | protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure | virtual |
| apply(core::pose::Pose &more_cut) | protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure | virtual |
| protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap) | protocols::moves::Mover | virtual |
| best_fragment_ | protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure | protected |
| best_score_ | protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure | protected |
| bIdealLoopClosing() const | protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure | inline |
| bIdealLoopClosing_ | protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure | protected |
| bKeepFragments_ | protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure | protected |
| bQuickTest() const | protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure | inlineprotected |
| bQuickTest_ | protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure | protected |
| chainbreak_max_ | protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure | protected |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const | protocols::moves::Mover | virtual |
| closure_fragments() const | protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure | inline |
| closure_fragments_ | protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure | protected |
| create() | protocols::moves::Mover | virtual |
| determine_loop(core::pose::Pose const &more_cut, core::pose::Pose &less_cut) | protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure | |
| evaluator_ | protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure | protected |
| fa_pose_ | protocols::loops::loop_closure::ccd::FASelectSlidingWindowLoopClosure | private |
| fascore(core::pose::Pose &fa_pose) const | protocols::loops::loop_closure::ccd::FASelectSlidingWindowLoopClosure | |
| FASelectSlidingWindowLoopClosure(core::fragment::FragSetCOP fragset, core::scoring::ScoreFunctionOP scorefxn, core::kinematics::MoveMapCOP movemap) | protocols::loops::loop_closure::ccd::FASelectSlidingWindowLoopClosure | |
| FASelectSlidingWindowLoopClosure() | protocols::loops::loop_closure::ccd::FASelectSlidingWindowLoopClosure | |
| filter_cst_ | protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure | protected |
| filter_cst_weight_ | protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure | protected |
| filter_score(core::pose::Pose &pose) | protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure | protected |
| Filters_map typedef | protocols::moves::Mover | |
| fragments(core::fragment::FragSetCOP frags) | protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure | inline |
| fragset_ | protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure | protected |
| fresh_instance() const | protocols::moves::Mover | virtual |
| generate_window_list(Size loop_size, WindowList &window_list) const | protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure | protected |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const | protocols::loops::loop_closure::ccd::FASelectSlidingWindowLoopClosure | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_type() const | protocols::moves::Mover | inline |
| give_up_ | protocols::loops::loop_closure::ccd::WidthFirstSlidingWindowLoopClosure | protected |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| keep_fragments(bool setting=true) | protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure | inline |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| loop_ | protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure | protected |
| max_loop_size_ | protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure | protected |
| min_breakout_fast_loops_ | protocols::loops::loop_closure::ccd::WidthFirstSlidingWindowLoopClosure | protected |
| min_breakout_good_loops_ | protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure | protected |
| min_fast_loops_ | protocols::loops::loop_closure::ccd::WidthFirstSlidingWindowLoopClosure | protected |
| min_good_loops_ | protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure | protected |
| min_loop_size_ | protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure | protected |
| movemap() const | protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure | inline |
| movemap(core::kinematics::MoveMapCOP movemap) | protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure | |
| movemap_ | protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure | protected |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| Mover(Mover const &other) | protocols::moves::Mover | |
| name() | protocols::moves::Mover | inlinestatic |
| nr_scored_fragments_ | protocols::loops::loop_closure::ccd::WidthFirstSlidingWindowLoopClosure | protected |
| nr_scored_sampling_passes_ | protocols::loops::loop_closure::ccd::WidthFirstSlidingWindowLoopClosure | protected |
| operator=(Mover const &other) | protocols::moves::Mover | |
| output_debug_structure(core::pose::Pose &pose, std::string prefix) | protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure | |
| Parent typedef | protocols::loops::loop_closure::ccd::FASelectSlidingWindowLoopClosure | private |
| parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache) | protocols::moves::Mover | virtual |
| parse_my_tag(TagPtr const tag, DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose) | protocols::moves::Mover | virtual |
| parse_state(SerializableState const &state) | protocols::moves::Mover | virtual |
| Pose typedef | protocols::moves::Mover | |
| PoseCOP typedef | protocols::moves::Mover | |
| process_fragments(core::fragment::FrameList &frame_in, core::pose::Pose const &more_cut, core::pose::Pose const &loop_pose) | protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure | protected |
| register_options() | protocols::loops::loop_closure::ccd::FASelectSlidingWindowLoopClosure | static |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| reset_status() | protocols::moves::Mover | |
| sample_loops(core::pose::Pose &more_cut, core::pose::Pose &less_cut) | protocols::loops::loop_closure::ccd::WidthFirstSlidingWindowLoopClosure | virtual |
| save_state(SerializableState &state) | protocols::moves::Mover | virtual |
| score_delta_ | protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure | protected |
| scored_frag_cycle_ratio(core::Real setting) | protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure | inline |
| scored_frag_cycle_ratio_ | protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure | protected |
| scorefxn() const | protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure | inline |
| scorefxn(core::scoring::ScoreFunctionOP sfxn) | protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure | inline |
| scorefxn_ | protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure | protected |
| select_final_loop(core::pose::Pose &more_cut, core::pose::Pose &less_cut) | protocols::loops::loop_closure::ccd::FASelectSlidingWindowLoopClosure | virtual |
| set_bIdealLoopClosing(bool setting) | protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure | inline |
| set_chainbreak_max(core::Real setting) | protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure | inline |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inline |
| set_defaults() | protocols::loops::loop_closure::ccd::FASelectSlidingWindowLoopClosure | |
| set_evaluation(evaluation::MetaPoseEvaluatorOP ev) | protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure | inline |
| set_fullatom_pose(core::pose::Pose &fa_pose) | protocols::loops::loop_closure::ccd::FASelectSlidingWindowLoopClosure | |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_loop(Loop const &loop_in) | protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure | inline |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| setPoseExtraScores(core::pose::Pose &pose) | protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure | static |
| setup_frag_scorefxn(core::scoring::ScoreFunction &scorefxn) | protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure | protected |
| short_frag_cycle_ratio(core::Real setting) | protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure | inline |
| short_frag_cycle_ratio_ | protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure | protected |
| SlidingWindowLoopClosure(core::fragment::FragSetCOP fragset, core::scoring::ScoreFunctionOP scorefxn, core::kinematics::MoveMapCOP movemap) | protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure | |
| SlidingWindowLoopClosure() | protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure | |
| ss_info_ | protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure | protected |
| Strings typedef | protocols::moves::Mover | |
| TagPtr typedef | protocols::moves::Mover | |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| type() const | protocols::moves::Mover | inline |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| vdw_delta_ | protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure | protected |
| vdw_score_type_ | protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure | protected |
| WidthFirstSlidingWindowLoopClosure(core::fragment::FragSetCOP fragset, core::scoring::ScoreFunctionOP scorefxn, core::kinematics::MoveMapCOP movemap) | protocols::loops::loop_closure::ccd::WidthFirstSlidingWindowLoopClosure | |
| WidthFirstSlidingWindowLoopClosure() | protocols::loops::loop_closure::ccd::WidthFirstSlidingWindowLoopClosure | |
| window_acceptance_ratio_ | protocols::loops::loop_closure::ccd::WidthFirstSlidingWindowLoopClosure | protected |
| WindowList typedef | protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure | protected |
| ~FASelectSlidingWindowLoopClosure() | protocols::loops::loop_closure::ccd::FASelectSlidingWindowLoopClosure | |
| ~Mover() | protocols::moves::Mover | virtual |
| ~SlidingWindowLoopClosure() | protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure | |
1.8.4