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core::scoring::constraints::FadeFunc Class Reference

#include <FadeFunc.hh>

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Public Member Functions

 FadeFunc (Real const cutoff_lower, Real const cutoff_upper, Real const fade_zone, Real const well_depth, Real const well_offset)
 
 FadeFunc (Real const cutoff_lower, Real const cutoff_upper, Real const fade_zone, Real const well_depth)
 
 FadeFunc (Real const cutoff_lower, Real const cutoff_upper, Real const fade_zone)
 
FuncOP clone () const
 
Real func (Real const x) const
 Returns a value representing this function evaluated at a given point. More...
 
Real dfunc (Real const x) const
 Returns a value representing the derivative of this function evaluated at a given point. More...
 
void read_data (std::istream &in)
 initialize this Func from the given std::istream. More...
 
void show_definition (std::ostream &out) const
 shows the definition of this function, usually the string type of function and the parameters passed in to the constructor. More...
 
Real cutoff_upper () const
 
Real cutoff_lower () const
 
Real fade_zone () const
 
void cutoff_upper (Real x)
 
void cutoff_lower (Real x)
 
void fade_zone (Real x)
 
Size show_violations (std::ostream &out, Real x, Size verbose_level, core::Real threshold=1) const
 show some sort of stringified representation of the violations for this constraint. More...
 
- Public Member Functions inherited from core::scoring::constraints::Func
virtual ~Func ()
 Automatically generated virtual destructor for class deriving directly from ReferenceCount. More...
 
virtual Real estimate_dfunc (Real const r) const
 Estimates the derivative of this function at a given radius by calculating the slope of the secant line from func(r) and func(r+1e-05). More...
 
virtual Real estimate_dfunc (Real const r, Real const h) const
 Estimates the derivative of this function at a given radius by calculating the slope of the secant line from func(r) and func(r+h). More...
 
virtual void show (std::ostream &out) const
 Prints out space-delimited columns for r, func, dfunc and dfunc_est. The values for func, dfunc and dfunc_est are plotted as a function of r, which is varied from 2-20 in steps of 0.5. The value for dfunc_est is the estimated by the method estimate_dfunc( r ). More...
 

Private Attributes

Real cutoff_lower_
 
Real cutoff_upper_
 
Real fade_zone_
 
Real well_depth_
 
Real well_offset_
 

Constructor & Destructor Documentation

core::scoring::constraints::FadeFunc::FadeFunc ( Real const  cutoff_lower,
Real const  cutoff_upper,
Real const  fade_zone,
Real const  well_depth,
Real const  well_offset 
)
inline

Referenced by clone().

core::scoring::constraints::FadeFunc::FadeFunc ( Real const  cutoff_lower,
Real const  cutoff_upper,
Real const  fade_zone,
Real const  well_depth 
)
inline
core::scoring::constraints::FadeFunc::FadeFunc ( Real const  cutoff_lower,
Real const  cutoff_upper,
Real const  fade_zone 
)
inline

Member Function Documentation

FuncOP core::scoring::constraints::FadeFunc::clone ( ) const
virtual
Real core::scoring::constraints::FadeFunc::cutoff_lower ( ) const
inline

References cutoff_lower_.

void core::scoring::constraints::FadeFunc::cutoff_lower ( Real  x)
inline

References cutoff_lower_.

Real core::scoring::constraints::FadeFunc::cutoff_upper ( ) const
inline

References cutoff_upper_.

void core::scoring::constraints::FadeFunc::cutoff_upper ( Real  x)
inline

References cutoff_upper_.

Real core::scoring::constraints::FadeFunc::dfunc ( Real const  const) const
virtual

Returns a value representing the derivative of this function evaluated at a given point.

Implements core::scoring::constraints::Func.

References protocols::match::upstream::b, cutoff_lower_, cutoff_upper_, fade_zone_, and well_depth_.

Real core::scoring::constraints::FadeFunc::fade_zone ( ) const
inline

References fade_zone_.

void core::scoring::constraints::FadeFunc::fade_zone ( Real  x)
inline

References fade_zone_.

Real core::scoring::constraints::FadeFunc::func ( Real const  const) const
virtual

Returns a value representing this function evaluated at a given point.

Implements core::scoring::constraints::Func.

References protocols::match::upstream::b, cutoff_lower_, cutoff_upper_, fade_zone_, well_depth_, and well_offset_.

void core::scoring::constraints::FadeFunc::read_data ( std::istream &  )
virtual

initialize this Func from the given std::istream.

Reimplemented from core::scoring::constraints::Func.

References cutoff_lower_, cutoff_upper_, fade_zone_, well_depth_, and well_offset_.

void core::scoring::constraints::FadeFunc::show_definition ( std::ostream &  out) const
virtual

shows the definition of this function, usually the string type of function and the parameters passed in to the constructor.

Reimplemented from core::scoring::constraints::Func.

References cutoff_lower_, cutoff_upper_, fade_zone_, well_depth_, and well_offset_.

Size core::scoring::constraints::FadeFunc::show_violations ( std::ostream &  out,
Real  r,
Size  verbose_level,
core::Real  threshold = 1 
) const
virtual

show some sort of stringified representation of the violations for this constraint.

Reimplemented from core::scoring::constraints::Func.

References cutoff_upper_, and core::scoring::constraints::Func::show_violations().

Member Data Documentation

Real core::scoring::constraints::FadeFunc::cutoff_lower_
private
Real core::scoring::constraints::FadeFunc::cutoff_upper_
private
Real core::scoring::constraints::FadeFunc::fade_zone_
private
Real core::scoring::constraints::FadeFunc::well_depth_
private
Real core::scoring::constraints::FadeFunc::well_offset_
private

The documentation for this class was generated from the following files: