| assign_state_to_all_nodes_immediately_ | core::pack::annealer::RotamerAssigningAnnealer | private |
| bestenergy() | core::pack::annealer::SimAnnealerBase | protected |
| bestrotamer_at_seqpos() | core::pack::annealer::SimAnnealerBase | protected |
| bestrotamer_at_seqpos() const | core::pack::annealer::SimAnnealerBase | protected |
| calc_freq_temp | core::pack::annealer::SimAnnealerBase | protectedstatic |
| calc_rot_freq() | core::pack::annealer::SimAnnealerBase | protected |
| calc_rot_freq() const | core::pack::annealer::SimAnnealerBase | protected |
| clear() | core::pack::annealer::SimAnnealerBase | protected |
| current_rot_index() | core::pack::annealer::SimAnnealerBase | protected |
| current_rot_index() const | core::pack::annealer::SimAnnealerBase | protected |
| current_to_pick_ | core::pack::annealer::RotamerAssigningAnnealer | private |
| FixbbRotamerSetsCOP typedef | core::pack::annealer::RotamerAssigningAnnealer | |
| get_calc_rot_freq() const | core::pack::annealer::SimAnnealerBase | |
| get_hightemp() const | core::pack::annealer::SimAnnealerBase | inlineprotected |
| get_inneriterations() const | core::pack::annealer::SimAnnealerBase | |
| get_lowtemp() const | core::pack::annealer::SimAnnealerBase | inlineprotected |
| get_outeriterations() const | core::pack::annealer::SimAnnealerBase | |
| get_start_with_current() const | core::pack::annealer::SimAnnealerBase | |
| get_temperature() const | core::pack::annealer::SimAnnealerBase | |
| hightemp | core::pack::annealer::SimAnnealerBase | protectedstatic |
| lowtemp | core::pack::annealer::SimAnnealerBase | protectedstatic |
| maxouteriterations | core::pack::annealer::SimAnnealerBase | protectedstatic |
| n_assigned_at_start_ | core::pack::annealer::RotamerAssigningAnnealer | private |
| num_rots_to_pack() const | core::pack::annealer::SimAnnealerBase | inlineprotected |
| num_rots_to_pack(Size setting) | core::pack::annealer::SimAnnealerBase | protected |
| pass_metropolis(core::PackerEnergy delta_energy) const | core::pack::annealer::SimAnnealerBase | |
| pass_metropolis(core::PackerEnergy previous_energy, core::PackerEnergy delta_energy) const | core::pack::annealer::SimAnnealerBase | |
| pick_a_rotamer(int cycle) | core::pack::annealer::RotamerAssigningAnnealer | |
| pick_a_rotamer_for_node(int node) const | core::pack::annealer::RotamerAssigningAnnealer | |
| quench() const | core::pack::annealer::SimAnnealerBase | |
| rot_freq() | core::pack::annealer::SimAnnealerBase | protected |
| rot_freq() const | core::pack::annealer::SimAnnealerBase | protected |
| rot_to_pack() const | core::pack::annealer::RotamerAssigningAnnealer | protected |
| rot_to_pack_ | core::pack::annealer::RotamerAssigningAnnealer | private |
| rotamer_sets() const | core::pack::annealer::RotamerAssigningAnnealer | protected |
| rotamer_sets_ | core::pack::annealer::RotamerAssigningAnnealer | private |
| RotamerAssigningAnnealer(int num_of_rot_to_pack, ObjexxFCL::FArray1D_int &bestrotamer_at_seqpos, core::PackerEnergy &bestenergy, bool start_with_current, FixbbRotamerSetsCOP p_rotamer_set, ObjexxFCL::FArray1_int ¤t_rot_index, bool calc_rot_freq, ObjexxFCL::FArray1D< core::PackerEnergy > &rot_freq) | core::pack::annealer::RotamerAssigningAnnealer | |
| RotamerAssigningAnnealer(utility::vector0< int > &rot_to_pack, int num_of_rot_to_pack, ObjexxFCL::FArray1D_int &bestrotamer_at_seqpos, core::PackerEnergy &bestenergy, bool start_with_current, FixbbRotamerSetsCOP p_rotamer_set, ObjexxFCL::FArray1_int ¤t_rot_index, bool calc_rot_freq, ObjexxFCL::FArray1D< core::PackerEnergy > &rot_freq) | core::pack::annealer::RotamerAssigningAnnealer | |
| RotamerSetsBaseCOP typedef | core::pack::annealer::SimAnnealerBase | |
| rots_for_nodes_ | core::pack::annealer::RotamerAssigningAnnealer | private |
| run()=0 | core::pack::annealer::SimAnnealerBase | pure virtual |
| scale_inneriterations(core::PackerEnergy const si) | core::pack::annealer::SimAnnealerBase | inline |
| scale_outeriterations(core::PackerEnergy const so) | core::pack::annealer::SimAnnealerBase | inline |
| set_assign_state_to_all_nodes_immediately(bool setting) | core::pack::annealer::RotamerAssigningAnnealer | |
| set_disallow_quench(bool const &setting) | core::pack::annealer::SimAnnealerBase | |
| set_hightemp(core::PackerEnergy) | core::pack::annealer::SimAnnealerBase | |
| set_lowtemp(core::PackerEnergy) | core::pack::annealer::SimAnnealerBase | |
| set_not_to_quench() | core::pack::annealer::SimAnnealerBase | |
| set_temperature(core::PackerEnergy new_temperature) | core::pack::annealer::SimAnnealerBase | |
| set_to_quench() | core::pack::annealer::SimAnnealerBase | |
| setup_iterations() | core::pack::annealer::SimAnnealerBase | |
| setup_iterations(const int &num_of_state_changes) | core::pack::annealer::SimAnnealerBase | |
| setup_rots_for_node(FixbbRotamerSetsCOP rotamer_sets) | core::pack::annealer::RotamerAssigningAnnealer | private |
| setup_temperature(const int &nn) | core::pack::annealer::SimAnnealerBase | |
| setup_temperature(const ObjexxFCL::FArray1D< core::PackerEnergy > &loopenergy, int nn) | core::pack::annealer::SimAnnealerBase | |
| SimAnnealerBase(int num_rots_to_pack, ObjexxFCL::FArray1D_int &bestrotamer_at_seqpos, core::PackerEnergy &bestenergy, bool start_with_current, ObjexxFCL::FArray1_int ¤t_rot_index, bool calc_rot_freq, ObjexxFCL::FArray1D< core::PackerEnergy > &rot_freq) | core::pack::annealer::SimAnnealerBase | |
| start_with_current() const | core::pack::annealer::SimAnnealerBase | protected |
| ~RotamerAssigningAnnealer() | core::pack::annealer::RotamerAssigningAnnealer | virtual |
| ~SimAnnealerBase() | core::pack::annealer::SimAnnealerBase | virtual |
1.8.4