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protocols::flexpep_docking::FlexPepDockingAbInitio Member List

This is the complete list of members for protocols::flexpep_docking::FlexPepDockingAbInitio, including all inherited members.

apply(core::pose::Pose &pose)protocols::flexpep_docking::FlexPepDockingAbInitiovirtual
protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap)protocols::moves::Movervirtual
clear_info()protocols::moves::Moverinlinevirtual
clone() const protocols::moves::Movervirtual
convertPSERtoASP(core::pose::Pose &pose, std::set< int > &pSer_positions)protocols::flexpep_docking::FlexPepDockingAbInitioprivate
convertPSERtoGLU(core::pose::Pose &pose, std::set< int > &pSer_positions)protocols::flexpep_docking::FlexPepDockingAbInitioprivate
create()protocols::moves::Movervirtual
Filters_map typedefprotocols::moves::Mover
flags_protocols::flexpep_docking::FlexPepDockingAbInitioprivate
FlexPepDockingAbInitio(FlexPepDockingFlags flags_in, core::scoring::ScoreFunctionOP scorefxn_in, core::kinematics::MoveMapOP movemap_in, Size const rb_jump_in=1)protocols::flexpep_docking::FlexPepDockingAbInitio
fragset3mer_protocols::flexpep_docking::FlexPepDockingAbInitioprivate
fragset5mer_protocols::flexpep_docking::FlexPepDockingAbInitioprivate
fragset9mer_protocols::flexpep_docking::FlexPepDockingAbInitioprivate
fresh_instance() const protocols::moves::Movervirtual
get_additional_output()protocols::moves::Movervirtual
get_current_job() const protocols::moves::Mover
get_current_tag() const protocols::moves::Moverinline
get_input_pose() const protocols::moves::Mover
get_last_move_status() const protocols::moves::Mover
get_name() const protocols::flexpep_docking::FlexPepDockingAbInitiovirtual
get_native_pose() const protocols::moves::Mover
get_type() const protocols::moves::Moverinline
info()protocols::moves::Moverinlinevirtual
info() const protocols::moves::Moverinlinevirtual
last_proposal_density_ratio()protocols::moves::Moverinlinevirtual
loop_relax_mover_protocols::flexpep_docking::FlexPepDockingAbInitioprivate
loopclosure_monte_carlo(core::pose::Pose &pose)protocols::flexpep_docking::FlexPepDockingAbInitioprivate
mc_protocols::flexpep_docking::FlexPepDockingAbInitioprivate
minimizer_protocols::flexpep_docking::FlexPepDockingAbInitioprivate
movemap_protocols::flexpep_docking::FlexPepDockingAbInitioprivate
Mover()protocols::moves::Mover
Mover(std::string const &type_name)protocols::moves::Mover
Mover(Mover const &other)protocols::moves::Mover
name()protocols::moves::Moverinlinestatic
operator=(Mover const &other)protocols::moves::Mover
parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache)protocols::moves::Movervirtual
parse_my_tag(TagPtr const tag, DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose)protocols::moves::Movervirtual
parse_state(SerializableState const &state)protocols::moves::Movervirtual
Pose typedefprotocols::moves::Mover
PoseCOP typedefprotocols::moves::Mover
rb_jump_protocols::flexpep_docking::FlexPepDockingAbInitioprivate
register_options()protocols::moves::Moverinlinestatic
reinitialize_for_each_job() const protocols::moves::Movervirtual
reinitialize_for_new_input() const protocols::moves::Movervirtual
reset_status()protocols::moves::Mover
restorePSER(core::pose::Pose &pose, std::set< int > const &pSer_positions)protocols::flexpep_docking::FlexPepDockingAbInitioprivate
rigidbody_monte_carlo(core::pose::Pose &pose, const int cycles, const float trans_magnitude, const float rot_magnitude, double &acceptance_rate)protocols::flexpep_docking::FlexPepDockingAbInitioprivate
save_state(SerializableState &state)protocols::moves::Movervirtual
scorefxn_protocols::flexpep_docking::FlexPepDockingAbInitioprivate
set_current_job(protocols::jobdist::BasicJobCOP job)protocols::moves::Mover
set_current_tag(std::string const &new_tag)protocols::moves::Moverinline
set_input_pose(PoseCOP pose)protocols::moves::Movervirtual
set_last_move_status(MoverStatus status)protocols::moves::Moverprotected
set_native_pose(PoseCOP pose)protocols::moves::Movervirtual
setup_for_apply(core::pose::Pose &pose)protocols::flexpep_docking::FlexPepDockingAbInitioprivate
Strings typedefprotocols::moves::Mover
TagPtr typedefprotocols::moves::Mover
test_move(Pose &pose)protocols::moves::Moverinlinevirtual
to_allatom(core::pose::Pose &pose, core::pose::Pose &referencePose) const protocols::flexpep_docking::FlexPepDockingAbInitioprivate
to_centroid(core::pose::Pose &pose) const protocols::flexpep_docking::FlexPepDockingAbInitioprivate
torsions_monte_carlo(core::pose::Pose &pose, const int cycles, double &acceptance_rate)protocols::flexpep_docking::FlexPepDockingAbInitioprivate
type() const protocols::moves::Moverinline
type(const std::string &type_in)protocols::moves::Moverinline
view_protocols::flexpep_docking::FlexPepDockingAbInitioprivate
~FlexPepDockingAbInitio()protocols::flexpep_docking::FlexPepDockingAbInitio
~Mover()protocols::moves::Movervirtual