| apply(core::pose::Pose &pose) | protocols::flexpep_docking::FlexPepDockingAbInitio | virtual |
| protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap) | protocols::moves::Mover | virtual |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const | protocols::moves::Mover | virtual |
| convertPSERtoASP(core::pose::Pose &pose, std::set< int > &pSer_positions) | protocols::flexpep_docking::FlexPepDockingAbInitio | private |
| convertPSERtoGLU(core::pose::Pose &pose, std::set< int > &pSer_positions) | protocols::flexpep_docking::FlexPepDockingAbInitio | private |
| create() | protocols::moves::Mover | virtual |
| Filters_map typedef | protocols::moves::Mover | |
| flags_ | protocols::flexpep_docking::FlexPepDockingAbInitio | private |
| FlexPepDockingAbInitio(FlexPepDockingFlags flags_in, core::scoring::ScoreFunctionOP scorefxn_in, core::kinematics::MoveMapOP movemap_in, Size const rb_jump_in=1) | protocols::flexpep_docking::FlexPepDockingAbInitio | |
| fragset3mer_ | protocols::flexpep_docking::FlexPepDockingAbInitio | private |
| fragset5mer_ | protocols::flexpep_docking::FlexPepDockingAbInitio | private |
| fragset9mer_ | protocols::flexpep_docking::FlexPepDockingAbInitio | private |
| fresh_instance() const | protocols::moves::Mover | virtual |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const | protocols::flexpep_docking::FlexPepDockingAbInitio | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_type() const | protocols::moves::Mover | inline |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| loop_relax_mover_ | protocols::flexpep_docking::FlexPepDockingAbInitio | private |
| loopclosure_monte_carlo(core::pose::Pose &pose) | protocols::flexpep_docking::FlexPepDockingAbInitio | private |
| mc_ | protocols::flexpep_docking::FlexPepDockingAbInitio | private |
| minimizer_ | protocols::flexpep_docking::FlexPepDockingAbInitio | private |
| movemap_ | protocols::flexpep_docking::FlexPepDockingAbInitio | private |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| Mover(Mover const &other) | protocols::moves::Mover | |
| name() | protocols::moves::Mover | inlinestatic |
| operator=(Mover const &other) | protocols::moves::Mover | |
| parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache) | protocols::moves::Mover | virtual |
| parse_my_tag(TagPtr const tag, DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose) | protocols::moves::Mover | virtual |
| parse_state(SerializableState const &state) | protocols::moves::Mover | virtual |
| Pose typedef | protocols::moves::Mover | |
| PoseCOP typedef | protocols::moves::Mover | |
| rb_jump_ | protocols::flexpep_docking::FlexPepDockingAbInitio | private |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| reset_status() | protocols::moves::Mover | |
| restorePSER(core::pose::Pose &pose, std::set< int > const &pSer_positions) | protocols::flexpep_docking::FlexPepDockingAbInitio | private |
| rigidbody_monte_carlo(core::pose::Pose &pose, const int cycles, const float trans_magnitude, const float rot_magnitude, double &acceptance_rate) | protocols::flexpep_docking::FlexPepDockingAbInitio | private |
| save_state(SerializableState &state) | protocols::moves::Mover | virtual |
| scorefxn_ | protocols::flexpep_docking::FlexPepDockingAbInitio | private |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inline |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| setup_for_apply(core::pose::Pose &pose) | protocols::flexpep_docking::FlexPepDockingAbInitio | private |
| Strings typedef | protocols::moves::Mover | |
| TagPtr typedef | protocols::moves::Mover | |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| to_allatom(core::pose::Pose &pose, core::pose::Pose &referencePose) const | protocols::flexpep_docking::FlexPepDockingAbInitio | private |
| to_centroid(core::pose::Pose &pose) const | protocols::flexpep_docking::FlexPepDockingAbInitio | private |
| torsions_monte_carlo(core::pose::Pose &pose, const int cycles, double &acceptance_rate) | protocols::flexpep_docking::FlexPepDockingAbInitio | private |
| type() const | protocols::moves::Mover | inline |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| view_ | protocols::flexpep_docking::FlexPepDockingAbInitio | private |
| ~FlexPepDockingAbInitio() | protocols::flexpep_docking::FlexPepDockingAbInitio | |
| ~Mover() | protocols::moves::Mover | virtual |
1.8.4