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core::pack::interaction_graph::SymmLinearMemNode Member List

This is the complete list of members for core::pack::interaction_graph::SymmLinearMemNode, including all inherited members.

ACCEPTANCE_REJECTION_HISTORY_LENGTHcore::pack::interaction_graph::SymmLinearMemNodeprivatestatic
ACCEPTEDcore::pack::interaction_graph::SymmLinearMemNodeprivatestatic
accepted_history_head_core::pack::interaction_graph::SymmLinearMemNodeprivate
accepted_rejected_substitution_history_core::pack::interaction_graph::SymmLinearMemNodeprivate
acknowledge_last_substititon_not_committed()core::pack::interaction_graph::SymmLinearMemNode
acknowledge_neighbors_partial_state_substitution(int edge_to_altered_neighbor, int other_node_new_state, int other_state_recent_history_index)core::pack::interaction_graph::SymmLinearMemNode
acknowledge_neighbors_state_substitution(int edge_to_altered_neighbor, core::PackerEnergy new_edge_energy, int other_node_new_state, int other_node_recent_history_index)core::pack::interaction_graph::SymmLinearMemNodeinline
add_edge(EdgeBase *edge_ptr)core::pack::interaction_graph::NodeBase
add_to_one_body_energies(ObjexxFCL::FArray1< core::PackerEnergy > &energy1b)core::pack::interaction_graph::SymmOnTheFlyNodevirtual
add_to_one_body_energy(int state, core::PackerEnergy energy)core::pack::interaction_graph::SymmOnTheFlyNodevirtual
already_prepped_for_simA_core::pack::interaction_graph::SymmLinearMemNodeprivate
alternate_state_core::pack::interaction_graph::SymmLinearMemNodeprivate
alternate_state_is_being_considered_core::pack::interaction_graph::SymmLinearMemNodeprivate
alternate_state_one_body_energy_core::pack::interaction_graph::SymmLinearMemNodeprivate
alternate_state_total_energy_core::pack::interaction_graph::SymmLinearMemNodeprivate
alternate_state_two_body_energies_core::pack::interaction_graph::SymmLinearMemNodeprivate
assign_state(int new_state)core::pack::interaction_graph::SymmLinearMemNode
assign_zero_state()core::pack::interaction_graph::SymmLinearMemNodevirtual
bb_bounding_sphere(int subunit) const core::pack::interaction_graph::SymmOnTheFlyNode
BoundingSphere typedefcore::pack::interaction_graph::SymmOnTheFlyNode
commit_considered_substitution()core::pack::interaction_graph::SymmLinearMemNode
complete_state_assignment()core::pack::interaction_graph::SymmLinearMemNode
compute_pair_energy_for_alternate_state(int edge_making_energy_request)core::pack::interaction_graph::SymmLinearMemNode
compute_pair_energy_for_current_state(int edge_making_energy_request)core::pack::interaction_graph::SymmLinearMemNode
compute_rotamer_pair_energy(int edge_making_energy_request, int state_this, int state_other) const core::pack::interaction_graph::SymmOnTheFlyNode
count_dynamic_memory() const core::pack::interaction_graph::SymmLinearMemNodevirtual
count_static_memory() const core::pack::interaction_graph::SymmLinearMemNodevirtual
curr_state_one_body_energy_core::pack::interaction_graph::SymmLinearMemNodeprivate
curr_state_total_energy_core::pack::interaction_graph::SymmLinearMemNodeprivate
curr_state_two_body_energies_core::pack::interaction_graph::SymmLinearMemNodeprivate
current_state_core::pack::interaction_graph::SymmLinearMemNodeprivate
depth_first_connected_component_counting()core::pack::interaction_graph::NodeBase
distinguish_backbone_and_sidechain() const core::pack::interaction_graph::SymmOnTheFlyNodeinline
distinguish_backbone_and_sidechain(bool setting)core::pack::interaction_graph::SymmOnTheFlyNode
drop_all_edges()core::pack::interaction_graph::NodeBase
drop_edge(std::list< EdgeBase * >::iterator edge_iterator)core::pack::interaction_graph::NodeBase
edge_list_begin()core::pack::interaction_graph::NodeBase
edge_list_end()core::pack::interaction_graph::NodeBase
filled_substitution_history_core::pack::interaction_graph::SymmLinearMemNodeprivate
find_edge(int other_node_index) const core::pack::interaction_graph::NodeBase
FixedBBNode(InteractionGraphBase *owner, int node_id, int num_states)core::pack::interaction_graph::FixedBBNodeinline
get_adjacent_node(int index) const core::pack::interaction_graph::NodeBaseinline
get_adjacent_node(int index)core::pack::interaction_graph::NodeBaseinline
get_adjacent_otf_node(int index)core::pack::interaction_graph::SymmOnTheFlyNodeinline
get_adjacent_otf_node(int index) const core::pack::interaction_graph::SymmOnTheFlyNodeinline
get_adjacent_symmlinmem_node(int index) const core::pack::interaction_graph::SymmLinearMemNodeinline
get_adjacent_symmlinmem_node(int index)core::pack::interaction_graph::SymmLinearMemNodeinline
get_curr_state_recent_state_id() const core::pack::interaction_graph::SymmLinearMemNodeinline
get_current_state() const core::pack::interaction_graph::SymmLinearMemNodeinline
get_edge_vector_up_to_date() const core::pack::interaction_graph::NodeBaseinlineprotected
get_incident_edge(int index) const core::pack::interaction_graph::NodeBaseinline
get_incident_edge(int index)core::pack::interaction_graph::NodeBaseinline
get_incident_otf_edge(int edge)core::pack::interaction_graph::SymmOnTheFlyNodeinline
get_incident_otf_edge(int edge) const core::pack::interaction_graph::SymmOnTheFlyNodeinline
get_incident_symmlinmem_edge(int index) const core::pack::interaction_graph::SymmLinearMemNodeinline
get_incident_symmlinmem_edge(int index)core::pack::interaction_graph::SymmLinearMemNodeinline
get_index_of_adjacent_node(int index) const core::pack::interaction_graph::NodeBaseinline
get_node_index() const core::pack::interaction_graph::NodeBaseinline
get_num_edges_to_larger_indexed_nodes() const core::pack::interaction_graph::NodeBaseinline
get_num_edges_to_smaller_indexed_nodes() const core::pack::interaction_graph::NodeBaseinline
get_num_incident_edges() const core::pack::interaction_graph::NodeBaseinline
get_num_res_types() const core::pack::interaction_graph::SymmOnTheFlyNodeinline
get_num_restype_groups() const core::pack::interaction_graph::SymmOnTheFlyNodeinline
get_num_states() const core::pack::interaction_graph::NodeBase
get_num_states_for_restype_group()core::pack::interaction_graph::SymmOnTheFlyNodeinline
get_num_states_for_restype_group() const core::pack::interaction_graph::SymmOnTheFlyNodeinline
get_num_states_for_restype_group(int restype_group)core::pack::interaction_graph::SymmOnTheFlyNodeinline
get_on_the_fly_owner()core::pack::interaction_graph::SymmOnTheFlyNodeinline
get_on_the_fly_owner() const core::pack::interaction_graph::SymmOnTheFlyNodeinline
get_one_body_energy(int state) const core::pack::interaction_graph::SymmOnTheFlyNodeinline
get_one_body_energy_current_state() const core::pack::interaction_graph::SymmLinearMemNodeinline
get_owner() const core::pack::interaction_graph::NodeBaseinlineprotected
get_owner()core::pack::interaction_graph::NodeBaseinlineprotected
get_recent_history_size() const core::pack::interaction_graph::SymmLinearMemNode
get_rotamer(int state, int subunit) const core::pack::interaction_graph::SymmOnTheFlyNode
get_state_offset_for_restype_group(int restype_group) const core::pack::interaction_graph::SymmOnTheFlyNodeinline
get_symmlinmem_ig_owner() const core::pack::interaction_graph::SymmLinearMemNodeinline
get_symmlinmem_ig_owner()core::pack::interaction_graph::SymmLinearMemNodeinline
get_totalE() const core::pack::interaction_graph::SymmLinearMemNodeinlinevirtual
neighbors_curr_state_core::pack::interaction_graph::SymmLinearMemNodeprivate
neighbors_state_recent_history_index_core::pack::interaction_graph::SymmLinearMemNodeprivate
NodeBase(InteractionGraphBase *, int node_id, int num_states)core::pack::interaction_graph::NodeBase
num_recently_accepted_core::pack::interaction_graph::SymmLinearMemNodeprivate
partial_assign_state(int new_state)core::pack::interaction_graph::SymmLinearMemNode
prepare_for_simulated_annealing()core::pack::interaction_graph::SymmLinearMemNodevirtual
print() const core::pack::interaction_graph::SymmLinearMemNodevirtual
print_internal_energies() const core::pack::interaction_graph::SymmLinearMemNode
project_deltaE_for_substitution(int alternate_state, core::PackerEnergy &prev_node_energy)core::pack::interaction_graph::SymmLinearMemNode
REJECTEDcore::pack::interaction_graph::SymmLinearMemNodeprivatestatic
rhq_core::pack::interaction_graph::SymmLinearMemNodeprivate
sc_bounding_sphere(int state, int subunit) const core::pack::interaction_graph::SymmOnTheFlyNode
set_one_body_energy(int state, core::PackerEnergy energy)core::pack::interaction_graph::SymmOnTheFlyNodevirtual
set_recent_history_size(int num_states_to_maintain_in_recent_history)core::pack::interaction_graph::SymmLinearMemNode
set_rotamers(rotamer_set::RotamerSetCOP rotamers)core::pack::interaction_graph::SymmOnTheFlyNode
state_unassigned() const core::pack::interaction_graph::SymmLinearMemNodeinlinevirtual
SymmLinearMemNode(InteractionGraphBase *owner, int node_id, int num_states)core::pack::interaction_graph::SymmLinearMemNode
SymmOnTheFlyNode(InteractionGraphBase *owner, int node_id, int num_states)core::pack::interaction_graph::SymmOnTheFlyNode
THRESHOLD_ACCEPTANCE_RATE_FOR_RPE_STORAGEcore::pack::interaction_graph::SymmLinearMemNodeprivatestatic
update_edge_vector()core::pack::interaction_graph::NodeBaseprotected
update_internal_energy_sums()core::pack::interaction_graph::SymmLinearMemNode
update_internal_vectors()core::pack::interaction_graph::SymmLinearMemNodeprivate
update_one_body_energy(int state, core::PackerEnergy energy)core::pack::interaction_graph::SymmOnTheFlyNodevirtual
update_recent_history(int state)core::pack::interaction_graph::SymmLinearMemNodeprivate
zero_one_body_energies()core::pack::interaction_graph::SymmOnTheFlyNodevirtual
zero_one_body_energy(int state)core::pack::interaction_graph::SymmOnTheFlyNodevirtual
~FixedBBNode()core::pack::interaction_graph::FixedBBNodeinlinevirtual
~NodeBase()core::pack::interaction_graph::NodeBasevirtual
~SymmLinearMemNode()core::pack::interaction_graph::SymmLinearMemNodevirtual
~SymmOnTheFlyNode()core::pack::interaction_graph::SymmOnTheFlyNodevirtual