protocols::toolbox::match_enzdes_util::EnzdesCstParamCache Class Reference

#include <EnzdesCstCache.hh>

Inheritance diagram for protocols::toolbox::match_enzdes_util::EnzdesCstParamCache:

Collaboration diagram for protocols::toolbox::match_enzdes_util::EnzdesCstParamCache:

Public Member Functions
	EnzdesCstParamCache ()
	Default constructor right now two instances of cached template res get created probably not ideal in general case, but is always the case in the current implementation of enzdes, and this is the only thing using this at the moment. More...
	EnzdesCstParamCache (EnzdesCstParamCache const &other)
virtual	~EnzdesCstParamCache ()
EnzCstTemplateResCacheOP	template_res_cache (core::Size index)
EnzCstTemplateResCacheCOP	template_res_cache (core::Size index) const
core::Size	template_res_cache_size () const
utility::vector1 < core::scoring::constraints::ConstraintCOP > const &	active_pose_constraints () const
utility::vector1 < core::scoring::constraints::ConstraintCOP > &	active_pose_constraints ()
void	set_active_pose_constraints (utility::vector1< core::scoring::constraints::ConstraintCOP > const &constraints)
void	clear_active_pose_constraints ()
utility::vector1 < CovalentConnectionReplaceInfoCOP > const &	covalent_connections () const
bool	missing_in_pose () const
void	remove_seqpos_from_template_res (core::Size seqpos)
void	set_position_for_missing_res (core::Size seqpos)
bool	contains_position (core::Size seqpos) const
void	remap_resid (core::id::SequenceMapping const &smap)
	remapping sequence positions More...

Private Attributes
utility::vector1 < EnzCstTemplateResCacheOP >	template_res_cache_
utility::vector1 < core::scoring::constraints::ConstraintCOP >	active_pose_constraints_
utility::vector1 < CovalentConnectionReplaceInfoCOP >	covalent_connections_

Friends
class	EnzConstraintParameters

Constructor & Destructor Documentation

protocols::toolbox::match_enzdes_util::EnzdesCstParamCache::EnzdesCstParamCache

(

)

Default constructor right now two instances of cached template res get created probably not ideal in general case, but is always the case in the current implementation of enzdes, and this is the only thing using this at the moment.

protocols::toolbox::match_enzdes_util::EnzdesCstParamCache::EnzdesCstParamCache

(

EnzdesCstParamCache const &

other)

References template_res_cache_.

protocols::toolbox::match_enzdes_util::EnzdesCstParamCache::~EnzdesCstParamCache ( )

virtual

Member Function Documentation

utility::vector1< core::scoring::constraints::ConstraintCOP > const& protocols::toolbox::match_enzdes_util::EnzdesCstParamCache::active_pose_constraints ( ) const

inline

References active_pose_constraints_.

utility::vector1< core::scoring::constraints::ConstraintCOP >& protocols::toolbox::match_enzdes_util::EnzdesCstParamCache::active_pose_constraints ( )

inline

References active_pose_constraints_.

void protocols::toolbox::match_enzdes_util::EnzdesCstParamCache::clear_active_pose_constraints

(

)

References active_pose_constraints_.

bool protocols::toolbox::match_enzdes_util::EnzdesCstParamCache::contains_position

(

core::Size

seqpos)

const

References template_res_cache_.

utility::vector1< CovalentConnectionReplaceInfoCOP > const& protocols::toolbox::match_enzdes_util::EnzdesCstParamCache::covalent_connections ( ) const

inline

References covalent_connections_.

bool protocols::toolbox::match_enzdes_util::EnzdesCstParamCache::missing_in_pose

(

)

const

References template_res_cache_.

Referenced by protocols::enzdes::enzutil::create_remark_headers_from_cstcache().

void protocols::toolbox::match_enzdes_util::EnzdesCstParamCache::remap_resid

(

core::id::SequenceMapping const &

smap)

remapping sequence positions

have to remap all the data that's cached

1. the information about the template res
2. the actual constraints
3. the information about covalent connections

References active_pose_constraints_, covalent_connections_, and template_res_cache_.

void protocols::toolbox::match_enzdes_util::EnzdesCstParamCache::remove_seqpos_from_template_res

(

core::Size

seqpos)

References template_res_cache_.

void protocols::toolbox::match_enzdes_util::EnzdesCstParamCache::set_active_pose_constraints

(

utility::vector1< core::scoring::constraints::ConstraintCOP > const &

constraints)

References active_pose_constraints_.

void protocols::toolbox::match_enzdes_util::EnzdesCstParamCache::set_position_for_missing_res

(

core::Size

seqpos)

References template_res_cache_.

EnzCstTemplateResCacheOP protocols::toolbox::match_enzdes_util::EnzdesCstParamCache::template_res_cache ( core::Size  index)

inline

References template_res_cache_.

Referenced by protocols::enzdes::enzutil::create_remark_headers_from_cstcache().

EnzCstTemplateResCacheCOP protocols::toolbox::match_enzdes_util::EnzdesCstParamCache::template_res_cache ( core::Size  index) const

inline

References template_res_cache_.

core::Size protocols::toolbox::match_enzdes_util::EnzdesCstParamCache::template_res_cache_size ( ) const

inline

References template_res_cache_.

Referenced by protocols::enzdes::enzutil::create_remark_headers_from_cstcache().

Friends And Related Function Documentation

friend class EnzConstraintParameters

friend

Member Data Documentation

utility::vector1< core::scoring::constraints::ConstraintCOP > protocols::toolbox::match_enzdes_util::EnzdesCstParamCache::active_pose_constraints_

private

Referenced by active_pose_constraints(), clear_active_pose_constraints(), remap_resid(), and set_active_pose_constraints().

utility::vector1< CovalentConnectionReplaceInfoCOP > protocols::toolbox::match_enzdes_util::EnzdesCstParamCache::covalent_connections_

private

Referenced by covalent_connections(), and remap_resid().

utility::vector1< EnzCstTemplateResCacheOP > protocols::toolbox::match_enzdes_util::EnzdesCstParamCache::template_res_cache_

private

Referenced by contains_position(), EnzdesCstParamCache(), missing_in_pose(), remap_resid(), remove_seqpos_from_template_res(), set_position_for_missing_res(), template_res_cache(), and template_res_cache_size().

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The documentation for this class was generated from the following files:

• src/protocols/toolbox/match_enzdes_util/EnzdesCstCache.hh
• src/protocols/toolbox/match_enzdes_util/EnzdesCstCache.cc