| ang123_ | protocols::toolbox::match_enzdes_util::LigandConformer | private |
| atom1_atom2_atom3_angle() const | protocols::toolbox::match_enzdes_util::LigandConformer | |
| atom1_atom2_distance() const | protocols::toolbox::match_enzdes_util::LigandConformer | |
| atom2_atom3_distance() const | protocols::toolbox::match_enzdes_util::LigandConformer | |
| atoms_123_ | protocols::toolbox::match_enzdes_util::LigandConformer | private |
| collision_check_id_2_restype_id(Size coll_check_id) const | protocols::toolbox::match_enzdes_util::LigandConformer | inline |
| collision_check_id_2_restype_id_ | protocols::toolbox::match_enzdes_util::LigandConformer | private |
| coordinate_in_D3_frame(Size restype_atomno, HTReal const &frame3) const | protocols::toolbox::match_enzdes_util::LigandConformer | inline |
| coordinate_in_global_frame(Size restype_atomno, HTReal const &orientation_frame) const | protocols::toolbox::match_enzdes_util::LigandConformer | inline |
| coordinates_from_orientation(Real6 const &orientation, utility::vector1< core::id::AtomID > const &atom_indices, utility::vector1< Vector > &atom_coords) const | protocols::toolbox::match_enzdes_util::LigandConformer | |
| create_collcheck_ordering(utility::vector1< bool > selected, Size count_from) | protocols::toolbox::match_enzdes_util::LigandConformer | private |
| d12_ | protocols::toolbox::match_enzdes_util::LigandConformer | private |
| d23_ | protocols::toolbox::match_enzdes_util::LigandConformer | private |
| frame_from_global_orientation(Real6 orientation) const | protocols::toolbox::match_enzdes_util::LigandConformer | |
| get_global_coords_as_FArray2D(ObjexxFCL::FArray2D< numeric::Real > &coords, HTReal const &orientation_frame, utility::vector1< core::Size > const &restype_atomnos) const | protocols::toolbox::match_enzdes_util::LigandConformer | |
| get_lig_restype() const | protocols::toolbox::match_enzdes_util::LigandConformer | |
| global_orientation_from_frame3(HTReal const &frame3) const | protocols::toolbox::match_enzdes_util::LigandConformer | |
| HTReal typedef | protocols::toolbox::match_enzdes_util::LigandConformer | |
| ignore_h_collisions(bool setting) | protocols::toolbox::match_enzdes_util::LigandConformer | |
| ignore_h_collisions_ | protocols::toolbox::match_enzdes_util::LigandConformer | private |
| initialize_from_residue(Size D1, Size D2, Size D3, Size orientation_atom1, Size orientation_atom2, Size orientation_atom3, core::conformation::Residue const &residue) | protocols::toolbox::match_enzdes_util::LigandConformer | |
| ligand_restype_ | protocols::toolbox::match_enzdes_util::LigandConformer | private |
| LigandConformer() | protocols::toolbox::match_enzdes_util::LigandConformer | |
| LigandConformer(LigandConformer const &) | protocols::toolbox::match_enzdes_util::LigandConformer | |
| move_atoms_to_collcheck_begin(utility::vector1< Size > const &restype_atnos_to_move_early) | protocols::toolbox::match_enzdes_util::LigandConformer | |
| n_collision_check_atoms() const | protocols::toolbox::match_enzdes_util::LigandConformer | inline |
| oatom1_oatom2_distance() const | protocols::toolbox::match_enzdes_util::LigandConformer | |
| oatom1_oatom2_oatom3_angle() const | protocols::toolbox::match_enzdes_util::LigandConformer | |
| oatom2_oatom3_distance() const | protocols::toolbox::match_enzdes_util::LigandConformer | |
| oats_in_D3_frame_ | protocols::toolbox::match_enzdes_util::LigandConformer | private |
| oframe_in_D3frame_ | protocols::toolbox::match_enzdes_util::LigandConformer | private |
| orientation_atoms_ | protocols::toolbox::match_enzdes_util::LigandConformer | private |
| parent typedef | protocols::toolbox::match_enzdes_util::LigandConformer | |
| points_in_D3_frame_ | protocols::toolbox::match_enzdes_util::LigandConformer | private |
| points_in_global_orintation_frame_ | protocols::toolbox::match_enzdes_util::LigandConformer | private |
| Real typedef | protocols::toolbox::match_enzdes_util::LigandConformer | |
| Real6 typedef | protocols::toolbox::match_enzdes_util::LigandConformer | |
| restype_id_2_collision_check_id(Size restype_atomno) const | protocols::toolbox::match_enzdes_util::LigandConformer | inline |
| restype_id_2_collision_check_id_ | protocols::toolbox::match_enzdes_util::LigandConformer | private |
| Size typedef | protocols::toolbox::match_enzdes_util::LigandConformer | |
| Vector typedef | protocols::toolbox::match_enzdes_util::LigandConformer | |
| ~LigandConformer() | protocols::toolbox::match_enzdes_util::LigandConformer | virtual |
1.8.4