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Public Types | Public Member Functions | Private Member Functions | Private Attributes | List of all members
protocols::fldsgn::MatchResidues Class Reference

#include <MatchResidues.hh>

Inheritance diagram for protocols::fldsgn::MatchResidues:
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Public Types

typedef protocols::moves::Mover Mover
 
typedef protocols::moves::MoverOP MoverOP
 
typedef core::Real Real
 
typedef core::Size Size
 
typedef core::pose::Pose Pose
 
typedef utility::tag::TagPtr TagPtr
 
typedef protocols::moves::DataMap DataMap
 
typedef
protocols::moves::Movers_map 
Movers_map
 
typedef
protocols::filters::Filters_map 
Filters_map
 
typedef utility::vector1< SizeVecSize
 
typedef utility::vector1< VecSizeVecVecSize
 

Public Member Functions

 MatchResidues ()
 
virtual ~MatchResidues ()
 
void parse_my_tag (TagPtr const tag, DataMap &, Filters_map const &, Movers_map const &, Pose const &)
 parse xml More...
 
core::Real compute (core::pose::Pose const &pose, VecSize &best_fit) const
 
core::Real compute_comb (core::pose::Pose const &pose, VecSize const &comb) const
 
core::Real superimpose_comb (core::pose::Pose &pose, VecSize const &comb) const
 
core::Real threshold () const
 
void threshold (core::Real value)
 

Private Member Functions

std::map< std::string,
boost::tuple< Size, Size > > 
map_ss_segments (std::string const &ss) const
 
void cart_product (VecVecSize &rvvi, VecSize &rvi, VecVecSize::const_iterator me, VecVecSize::const_iterator end) const
 
VecVecSize cart_product (VecVecSize const &input) const
 

Private Attributes

core::pose::Pose reference_pose_
 
VecSize reference_residues_indexes_
 
VecVecSize mod_segment_prod_
 
core::Real threshold_
 

Member Typedef Documentation

typedef utility::tag::TagPtr protocols::fldsgn::MatchResidues::TagPtr

Constructor & Destructor Documentation

protocols::fldsgn::MatchResidues::MatchResidues ( )
protocols::fldsgn::MatchResidues::~MatchResidues ( )
virtual

Member Function Documentation

void protocols::fldsgn::MatchResidues::cart_product ( VecVecSize rvvi,
VecSize rvi,
VecVecSize::const_iterator  me,
VecVecSize::const_iterator  end 
) const
private

References core::sequence::end.

Referenced by cart_product(), and parse_my_tag().

VecVecSize protocols::fldsgn::MatchResidues::cart_product ( VecVecSize const &  input) const
private

References cart_product().

core::Real protocols::fldsgn::MatchResidues::compute ( core::pose::Pose const &  pose,
VecSize best_fit 
) const
core::Real protocols::fldsgn::MatchResidues::compute_comb ( core::pose::Pose const &  pose,
VecSize const &  comb 
) const
std::map< std::string, boost::tuple< core::Size, core::Size > > protocols::fldsgn::MatchResidues::map_ss_segments ( std::string const &  ss) const
private
void protocols::fldsgn::MatchResidues::parse_my_tag ( TagPtr const  tag,
DataMap ,
Filters_map const &  ,
Movers_map const &  ,
Pose const &   
)
core::Real protocols::fldsgn::MatchResidues::superimpose_comb ( core::pose::Pose pose,
VecSize const &  comb 
) const
core::Real protocols::fldsgn::MatchResidues::threshold ( ) const
inline
void protocols::fldsgn::MatchResidues::threshold ( core::Real  value)
inline

References threshold_.

Member Data Documentation

VecVecSize protocols::fldsgn::MatchResidues::mod_segment_prod_
private

Referenced by compute(), and parse_my_tag().

core::pose::Pose protocols::fldsgn::MatchResidues::reference_pose_
private
VecSize protocols::fldsgn::MatchResidues::reference_residues_indexes_
private
core::Real protocols::fldsgn::MatchResidues::threshold_
private

Referenced by parse_my_tag(), and threshold().


The documentation for this class was generated from the following files: