Rosetta 3.5
 All Classes Namespaces Files Functions Variables Typedefs Enumerations Enumerator Friends Macros Pages
Classes | Typedefs | Functions
protocols::loops::loop_closure::kinematic_closure Namespace Reference

Classes

class  KinematicMover
 A mover class for performing kinematic loop closure on a peptide segment . More...
 
class  KinematicPerturber
 pure virtual base class for KinematicPerturber. KinematicPerturbers determine HOW loops should be perturbed. The base class contains a provision for determining WHERE they should be perturbed: MoveMap sensitivity. More...
 
class  TorsionSamplingKinematicPerturber
 torsion sampling kinematic perturber More...
 
class  VicinitySamplingKinematicPerturber
 vicinity sampling kinematic perturber More...
 
class  TorsionSweepingKinematicPerturber
 WARNING WARNING UNTESTED!!!! torsion sweeping kinematic perturber. More...
 
class  NeighborDependentTorsionSamplingKinematicPerturber
 neighbor-dependent torsion sampling kinematic perturber – uses rama2b for phi/psi lookup More...
 
class  TorsionRestrictedKinematicPerturber
 torsion-restricted kinematic perturber (still samples randomly, but only within a given torsion bin) More...
 
class  TabooSamplingKinematicPerturber
 Taboo-sampling kinematic perturber (still samples randomly, but only within a specific torsion bin, and the Taboo sampler ensures that this torsion bin is varied in each iteration) More...
 
class  NeighborDependentTabooSamplingKinematicPerturber
 Neighbor-dependent Taboo-sampling kinematic perturber (still samples randomly, but only within a given torsion bin; the Taboo sampler ensures that this torsion bin is varied in each iteration) that uses neighbor-dependent Ramachandran distributions (rama2b) More...
 
class  KinematicWrapper
 

Typedefs

typedef
utility::pointer::owning_ptr
< KinematicMover
KinematicMoverOP
 
typedef
utility::pointer::owning_ptr
< KinematicMover const > 
KinematicMoverCOP
 
typedef
utility::pointer::access_ptr
< KinematicMover const > 
KinematicMoverCAP
 
typedef
utility::pointer::owning_ptr
< KinematicPerturber
KinematicPerturberOP
 
typedef
utility::pointer::owning_ptr
< KinematicPerturber const > 
KinematicPerturberCOP
 
typedef
utility::pointer::owning_ptr
< TorsionSamplingKinematicPerturber
TorsionSamplingKinematicPerturberOP
 
typedef
utility::pointer::owning_ptr
< TorsionSamplingKinematicPerturber
const > 
TorsionSamplingKinematicPerturberCOP
 
typedef
utility::pointer::owning_ptr
< VicinitySamplingKinematicPerturber
VicinitySamplingKinematicPerturberOP
 
typedef
utility::pointer::owning_ptr
< VicinitySamplingKinematicPerturber
const > 
VicinitySamplingKinematicPerturberCOP
 
typedef
utility::pointer::owning_ptr
< TorsionSweepingKinematicPerturber
TorsionSweepingKinematicPerturberOP
 
typedef
utility::pointer::owning_ptr
< TorsionSweepingKinematicPerturber
const > 
TorsionSweepingKinematicPerturberCOP
 
typedef
utility::pointer::owning_ptr
< NeighborDependentTorsionSamplingKinematicPerturber
NeighborDependentTorsionSamplingKinematicPerturberOP
 
typedef
utility::pointer::owning_ptr
< NeighborDependentTorsionSamplingKinematicPerturber
const > 
NeighborDependentTorsionSamplingKinematicPerturberCOP
 
typedef
utility::pointer::owning_ptr
< NeighborDependentTabooSamplingKinematicPerturber
NeighborDependentTabooSamplingKinematicPerturberOP
 
typedef
utility::pointer::owning_ptr
< NeighborDependentTabooSamplingKinematicPerturber
const > 
NeighborDependentTabooSamplingKinematicPerturberCOP
 
typedef
utility::pointer::owning_ptr
< TorsionRestrictedKinematicPerturber
TorsionRestrictedKinematicPerturberOP
 
typedef
utility::pointer::owning_ptr
< TorsionRestrictedKinematicPerturber
const > 
TorsionRestrictedKinematicPerturberCOP
 
typedef
utility::pointer::owning_ptr
< TabooSamplingKinematicPerturber
TabooSamplingKinematicPerturberOP
 
typedef
utility::pointer::owning_ptr
< TabooSamplingKinematicPerturber
const > 
TabooSamplingKinematicPerturberCOP
 
typedef
utility::pointer::owning_ptr
< KinematicWrapper
KinematicWrapperOP
 
typedef
utility::pointer::owning_ptr
< KinematicWrapper const > 
KinematicWrapperCOP
 

Functions

static
numeric::random::RandomGenerator 
RG (43134)
 
static basic::Tracer TR ("protocols.loops.loop_closure.kinematic_closure.KinematicPerturber")
 

Typedef Documentation

Function Documentation

static numeric::random::RandomGenerator protocols::loops::loop_closure::kinematic_closure::RG ( 43134  )
static
static basic::Tracer protocols::loops::loop_closure::kinematic_closure::TR ( "protocols.loops.loop_closure.kinematic_closure.KinematicPerturber"  )
static