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Public Member Functions | Private Attributes | List of all members
core::scoring::constraints::HarmonicFunc Class Reference

#include <HarmonicFunc.hh>

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Public Member Functions

 HarmonicFunc (Real const x0_in, Real const sd_in)
 
FuncOP clone () const
 
Real func (Real const x) const
 Returns a value representing this function evaluated at a given point. More...
 
Real dfunc (Real const x) const
 Returns a value representing the derivative of this function evaluated at a given point. More...
 
void read_data (std::istream &in)
 initialize this Func from the given std::istream. More...
 
void show_definition (std::ostream &out) const
 shows the definition of this function, usually the string type of function and the parameters passed in to the constructor. More...
 
Real x0 () const
 
Real sd () const
 
void x0 (Real x)
 
void sd (Real sd)
 
Size show_violations (std::ostream &out, Real x, Size verbose_level, core::Real threshold=1) const
 show some sort of stringified representation of the violations for this constraint. More...
 
- Public Member Functions inherited from core::scoring::constraints::Func
virtual ~Func ()
 Automatically generated virtual destructor for class deriving directly from ReferenceCount. More...
 
virtual Real estimate_dfunc (Real const r) const
 Estimates the derivative of this function at a given radius by calculating the slope of the secant line from func(r) and func(r+1e-05). More...
 
virtual Real estimate_dfunc (Real const r, Real const h) const
 Estimates the derivative of this function at a given radius by calculating the slope of the secant line from func(r) and func(r+h). More...
 
virtual void show (std::ostream &out) const
 Prints out space-delimited columns for r, func, dfunc and dfunc_est. The values for func, dfunc and dfunc_est are plotted as a function of r, which is varied from 2-20 in steps of 0.5. The value for dfunc_est is the estimated by the method estimate_dfunc( r ). More...
 

Private Attributes

Real x0_
 
Real sd_
 

Constructor & Destructor Documentation

core::scoring::constraints::HarmonicFunc::HarmonicFunc ( Real const  x0_in,
Real const  sd_in 
)
inline

Referenced by clone().

Member Function Documentation

FuncOP core::scoring::constraints::HarmonicFunc::clone ( ) const
virtual

Implements core::scoring::constraints::Func.

References HarmonicFunc(), sd_, and x0_.

Real core::scoring::constraints::HarmonicFunc::dfunc ( Real const  const) const
virtual

Returns a value representing the derivative of this function evaluated at a given point.

Implements core::scoring::constraints::Func.

References sd_, and x0_.

Real core::scoring::constraints::HarmonicFunc::func ( Real const  const) const
virtual

Returns a value representing this function evaluated at a given point.

Implements core::scoring::constraints::Func.

References sd_, and x0_.

Referenced by show_violations().

void core::scoring::constraints::HarmonicFunc::read_data ( std::istream &  )
virtual

initialize this Func from the given std::istream.

Reimplemented from core::scoring::constraints::Func.

References sd_, and x0_.

Real core::scoring::constraints::HarmonicFunc::sd ( ) const
inline

References sd_.

Referenced by sd().

void core::scoring::constraints::HarmonicFunc::sd ( Real  sd)
inline

References sd(), and sd_.

void core::scoring::constraints::HarmonicFunc::show_definition ( std::ostream &  out) const
virtual

shows the definition of this function, usually the string type of function and the parameters passed in to the constructor.

Reimplemented from core::scoring::constraints::Func.

References sd_, and x0_.

Size core::scoring::constraints::HarmonicFunc::show_violations ( std::ostream &  out,
Real  r,
Size  verbose_level,
core::Real  threshold = 1 
) const
virtual

show some sort of stringified representation of the violations for this constraint.

Reimplemented from core::scoring::constraints::Func.

References func(), sd_, core::scoring::constraints::Func::show_violations(), and x0_.

Real core::scoring::constraints::HarmonicFunc::x0 ( ) const
inline

References x0_.

void core::scoring::constraints::HarmonicFunc::x0 ( Real  x)
inline

References x0_.

Member Data Documentation

Real core::scoring::constraints::HarmonicFunc::sd_
private
Real core::scoring::constraints::HarmonicFunc::x0_
private

The documentation for this class was generated from the following files: