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protocols::forge::components::VarLengthBuild Member List

This is the complete list of members for protocols::forge::components::VarLengthBuild, including all inherited members.

abego_protocols::forge::components::VarLengthBuildprivate
add_rcg(RemodelConstraintGeneratorOP rcg)protocols::forge::components::VarLengthBuild
add_setup_mover(moves::MoverOP mover_in)protocols::forge::components::VarLengthBuild
add_user_provided_mover(moves::MoverOP mover_in)protocols::forge::components::VarLengthBuild
apply(Pose &pose)protocols::forge::components::VarLengthBuildvirtual
protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap)protocols::moves::Movervirtual
BIOPConstIterator typedefprotocols::forge::components::VarLengthBuild
BuildManager typedefprotocols::forge::components::VarLengthBuild
cache_fragments() const protocols::forge::components::VarLengthBuildinline
cache_fragments(bool const flag)protocols::forge::components::VarLengthBuildinline
cache_fragments_protocols::forge::components::VarLengthBuildprivate
centroid_build(Pose &pose)protocols::forge::components::VarLengthBuildprotectedvirtual
clear_fragments()protocols::forge::components::VarLengthBuild
clear_info()protocols::moves::Moverinlinevirtual
clear_rcgs()protocols::forge::components::VarLengthBuild
clear_setup_movers()protocols::forge::components::VarLengthBuild
clear_user_provided_movers()protocols::forge::components::VarLengthBuild
clone() const protocols::forge::components::VarLengthBuildvirtual
ConstantLengthFragSetOP typedefprotocols::forge::components::VarLengthBuild
create()protocols::moves::Movervirtual
Filters_map typedefprotocols::moves::Mover
frag1_protocols::forge::components::VarLengthBuildprivate
frag3_protocols::forge::components::VarLengthBuildprivate
frag9_protocols::forge::components::VarLengthBuildprivate
fragfull_protocols::forge::components::VarLengthBuildprivate
fragments_picked_protocols::forge::components::VarLengthBuildprivate
FrameList typedefprotocols::forge::components::VarLengthBuild
fresh_instance() const protocols::forge::components::VarLengthBuildvirtual
get_additional_output()protocols::moves::Movervirtual
get_current_job() const protocols::moves::Mover
get_current_tag() const protocols::moves::Moverinline
get_input_pose() const protocols::moves::Mover
get_last_move_status() const protocols::moves::Mover
get_name() const protocols::forge::components::VarLengthBuildvirtual
get_native_pose() const protocols::moves::Mover
get_type() const protocols::moves::Moverinline
ignore_cmdline_enzdes_cstfile(bool const flag)protocols::forge::components::VarLengthBuildinline
ignore_cmdline_enzdes_cstfile_protocols::forge::components::VarLengthBuildprivate
info()protocols::moves::Moverinlinevirtual
info() const protocols::moves::Moverinlinevirtual
Interval typedefprotocols::forge::components::VarLengthBuild
last_proposal_density_ratio()protocols::moves::Moverinlinevirtual
loop_mover_fold_tree_constant(bool const flag)protocols::forge::components::VarLengthBuildinline
loop_mover_fold_tree_constant_protocols::forge::components::VarLengthBuildprivate
loop_mover_instance(loops::LoopsOP const loops, MoveMap const &false_mm)protocols::forge::components::VarLengthBuildprotectedvirtual
loop_mover_str() const protocols::forge::components::VarLengthBuildinline
loop_mover_str(String const &str)protocols::forge::components::VarLengthBuildinline
loop_mover_str_protocols::forge::components::VarLengthBuildprivate
Loops typedefprotocols::forge::components::VarLengthBuild
manager() const protocols::forge::components::VarLengthBuildinline
manager(BuildManager const &manager)protocols::forge::components::VarLengthBuild
manager_protocols::forge::components::VarLengthBuildprivate
max_linear_chainbreak() const protocols::forge::components::VarLengthBuildinline
max_linear_chainbreak(Real const tol)protocols::forge::components::VarLengthBuildinline
max_linear_chainbreak_protocols::forge::components::VarLengthBuildprivate
MoveMap typedefprotocols::forge::components::VarLengthBuild
Mover()protocols::moves::Mover
Mover(std::string const &type_name)protocols::moves::Mover
Mover(Mover const &other)protocols::moves::Mover
MoverOP typedefprotocols::forge::components::VarLengthBuild
name()protocols::moves::Moverinlinestatic
new_secondary_structure_override() const protocols::forge::components::VarLengthBuildinline
new_secondary_structure_override(String const &str)protocols::forge::components::VarLengthBuildinline
new_secondary_structure_override_protocols::forge::components::VarLengthBuildprivate
new_sequence_override() const protocols::forge::components::VarLengthBuildinline
new_sequence_override(String const &str)protocols::forge::components::VarLengthBuildinline
new_sequence_override_protocols::forge::components::VarLengthBuildprivate
num_fragpick() const protocols::forge::components::VarLengthBuildinline
num_fragpick(Size const num)protocols::forge::components::VarLengthBuildinline
num_fragpick_protocols::forge::components::VarLengthBuildprivate
operator=(VarLengthBuild const &rval)protocols::forge::components::VarLengthBuildprivate
protocols::moves::Mover::operator=(Mover const &other)protocols::moves::Mover
OrderedFragSetOP typedefprotocols::forge::components::VarLengthBuild
Original2Modified typedefprotocols::forge::components::VarLengthBuild
original_sequence()protocols::forge::components::VarLengthBuildinline
original_sequence(String const &seq)protocols::forge::components::VarLengthBuildinline
original_sequence_protocols::forge::components::VarLengthBuildprivate
parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache)protocols::moves::Movervirtual
parse_my_tag(TagPtr const tag, DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose)protocols::moves::Movervirtual
parse_state(SerializableState const &state)protocols::moves::Movervirtual
pick_all_fragments(String const &complete_ss, String const &complete_aa, utility::vector1< String > const &complete_abego, Interval const &interval, Size const n_frags)protocols::forge::components::VarLengthBuildprotected
pick_fragments(String const &complete_ss, String const &complete_aa, utility::vector1< String > const &complete_abego, Interval const &interval, Size const frag_length, Size const n_frags)protocols::forge::components::VarLengthBuildprotected
Pose typedefprotocols::forge::components::VarLengthBuild
PoseCOP typedefprotocols::moves::Mover
Positions typedefprotocols::forge::components::VarLengthBuild
rcgs_protocols::forge::components::VarLengthBuildprivate
Real typedefprotocols::forge::components::VarLengthBuild
recover_original_on_failure() const protocols::forge::components::VarLengthBuildinline
recover_original_on_failure(bool const flag)protocols::forge::components::VarLengthBuildinline
recover_original_on_failure_protocols::forge::components::VarLengthBuildprivate
register_options()protocols::moves::Moverinlinestatic
reinitialize_for_each_job() const protocols::moves::Movervirtual
reinitialize_for_new_input() const protocols::moves::Movervirtual
remodel_data_protocols::forge::components::VarLengthBuildprivate
RemodelConstraintGeneratorOP typedefprotocols::forge::components::VarLengthBuild
RemodelData typedefprotocols::forge::components::VarLengthBuild
remove_remodel_constraints(Pose &pose)protocols::forge::components::VarLengthBuildprotected
repeat_tail_length_protocols::forge::components::VarLengthBuildprivate
reset_status()protocols::moves::Mover
restart_mode() const protocols::forge::components::VarLengthBuildinline
restart_mode(bool const flag)protocols::forge::components::VarLengthBuildinline
restart_mode_protocols::forge::components::VarLengthBuildprivate
save_state(SerializableState &state)protocols::moves::Movervirtual
ScoreFunction typedefprotocols::forge::components::VarLengthBuild
scorefunction(ScoreFunction const &sfx)protocols::forge::components::VarLengthBuild
scorefunction(ScoreFunctionOP const &sfx)protocols::forge::components::VarLengthBuild
ScoreFunctionOP typedefprotocols::forge::components::VarLengthBuild
set_abego(utility::vector1< String > const &abego)protocols::forge::components::VarLengthBuildinline
set_current_job(protocols::jobdist::BasicJobCOP job)protocols::moves::Mover
set_current_tag(std::string const &new_tag)protocols::moves::Moverinline
set_input_pose(PoseCOP pose)protocols::moves::Movervirtual
set_last_move_status(MoverStatus status)protocols::moves::Moverprotected
set_native_pose(PoseCOP pose)protocols::moves::Movervirtual
setup_movers_protocols::forge::components::VarLengthBuildprivate
setup_remodel_constraints(Pose &pose)protocols::forge::components::VarLengthBuildprotected
sfx_protocols::forge::components::VarLengthBuildprivate
Size typedefprotocols::forge::components::VarLengthBuild
String typedefprotocols::forge::components::VarLengthBuild
Strings typedefprotocols::moves::Mover
Super typedefprotocols::forge::components::VarLengthBuildprivate
TagPtr typedefprotocols::moves::Mover
test_move(Pose &pose)protocols::moves::Moverinlinevirtual
type() const protocols::moves::Moverinline
type(const std::string &type_in)protocols::moves::Moverinline
use_fullmer() const protocols::forge::components::VarLengthBuildinline
use_fullmer(bool const flag)protocols::forge::components::VarLengthBuildinline
use_fullmer_protocols::forge::components::VarLengthBuildprivate
user_provided_movers_protocols::forge::components::VarLengthBuildprivate
user_provided_movers_apply_cycle_protocols::forge::components::VarLengthBuildprivate
vall_memory_usage() const protocols::forge::components::VarLengthBuildinline
vall_memory_usage(VLB_VallMemoryUsage::Enum const level)protocols::forge::components::VarLengthBuildinline
vall_memory_usage_protocols::forge::components::VarLengthBuildprivate
VarLengthBuild()protocols::forge::components::VarLengthBuild
VarLengthBuild(BuildManager const &manager)protocols::forge::components::VarLengthBuild
VarLengthBuild(BuildManager const &manager, RemodelData const &remodel_data)protocols::forge::components::VarLengthBuild
VarLengthBuild(VarLengthBuild const &rval)protocols::forge::components::VarLengthBuild
~Mover()protocols::moves::Movervirtual
~VarLengthBuild()protocols::forge::components::VarLengthBuild