allowed_surface_aa() | protocols::forge::remodel::RemodelMover | privatestatic |
apply(Pose &pose) | protocols::forge::remodel::RemodelMover | virtual |
protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap) | protocols::moves::Mover | virtual |
blueprint_ | protocols::forge::remodel::RemodelMover | private |
BuildInstructionOP typedef | protocols::forge::remodel::RemodelMover | |
BuildManager typedef | protocols::forge::remodel::RemodelMover | |
centroid_build(Pose &pose, protocols::forge::build::BuildManager &manager) | protocols::forge::remodel::RemodelMover | private |
centroid_build(Pose &pose) | protocols::forge::remodel::RemodelMover | private |
centroid_loop_mover_str(String const &loop_mover_str) | protocols::forge::remodel::RemodelMover | inline |
centroid_loop_mover_str_ | protocols::forge::remodel::RemodelMover | private |
centroid_scorefunction() const | protocols::forge::remodel::RemodelMover | |
centroid_scorefunction(ScoreFunction const &sfx) | protocols::forge::remodel::RemodelMover | |
centroid_scorefunction(ScoreFunctionOP const &sfx) | protocols::forge::remodel::RemodelMover | |
centroid_sfx_ | protocols::forge::remodel::RemodelMover | private |
clear_info() | protocols::moves::Mover | inlinevirtual |
clone() const | protocols::forge::remodel::RemodelMover | virtual |
clone() | protocols::forge::remodel::RemodelMover | virtual |
confirm_sequence(core::pose::Pose &pose) | protocols::forge::remodel::RemodelMover | |
create() | protocols::moves::Mover | virtual |
DataMap typedef | protocols::forge::remodel::RemodelMover | |
design_info_ | protocols::forge::remodel::RemodelMover | private |
design_refine(Pose &pose, RemodelDesignMover &designMover) | protocols::forge::remodel::RemodelMover | private |
design_refine_seq_relax(Pose &pose, RemodelDesignMover &designMover) | protocols::forge::remodel::RemodelMover | private |
DesignInfo typedef | protocols::forge::remodel::RemodelMover | |
dr_cycles(Size const cycles) | protocols::forge::remodel::RemodelMover | inline |
dr_cycles_ | protocols::forge::remodel::RemodelMover | private |
Filters_map typedef | protocols::forge::remodel::RemodelMover | |
fresh_instance() const | protocols::forge::remodel::RemodelMover | virtual |
fresh_instance() | protocols::forge::remodel::RemodelMover | virtual |
fullatom_scorefunction() const | protocols::forge::remodel::RemodelMover | |
fullatom_scorefunction(ScoreFunction const &sfx) | protocols::forge::remodel::RemodelMover | |
fullatom_scorefunction(ScoreFunctionOP const &sfx) | protocols::forge::remodel::RemodelMover | |
fullatom_sfx_ | protocols::forge::remodel::RemodelMover | private |
generic_taskfactory() | protocols::forge::remodel::RemodelMover | private |
get_additional_output() | protocols::moves::Mover | virtual |
get_current_job() const | protocols::moves::Mover | |
get_current_tag() const | protocols::moves::Mover | inline |
get_input_pose() const | protocols::moves::Mover | |
get_last_move_status() const | protocols::moves::Mover | |
get_name() const | protocols::forge::remodel::RemodelMover | virtual |
get_native_pose() const | protocols::moves::Mover | |
get_type() const | protocols::moves::Mover | inline |
info() | protocols::moves::Mover | inlinevirtual |
info() const | protocols::moves::Mover | inlinevirtual |
Interval typedef | protocols::forge::remodel::RemodelMover | |
last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
loops_buns_polar_calc_name() | protocols::forge::remodel::RemodelMover | inlinestatic |
manager_ | protocols::forge::remodel::RemodelMover | private |
max_linear_chainbreak(Real const threshold) | protocols::forge::remodel::RemodelMover | inline |
max_linear_chainbreak_ | protocols::forge::remodel::RemodelMover | private |
Mover() | protocols::moves::Mover | |
Mover(std::string const &type_name) | protocols::moves::Mover | |
Mover(Mover const &other) | protocols::moves::Mover | |
MoverOP typedef | protocols::forge::remodel::RemodelMover | |
Movers_map typedef | protocols::forge::remodel::RemodelMover | |
name() | protocols::moves::Mover | inlinestatic |
native_pose_ | protocols::forge::remodel::RemodelMover | private |
neighborhood_buns_polar_calc_name() | protocols::forge::remodel::RemodelMover | inlinestatic |
neighborhood_calc_name() | protocols::forge::remodel::RemodelMover | inlinestatic |
operator=(RemodelMover const &rval) | protocols::forge::remodel::RemodelMover | private |
protocols::moves::Mover::operator=(Mover const &other) | protocols::moves::Mover | |
Original2Modified typedef | protocols::forge::remodel::RemodelMover | |
OriginalInterval2DesignString typedef | protocols::forge::remodel::RemodelMover | |
parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache) | protocols::moves::Mover | virtual |
parse_my_tag(TagPtr const tag, DataMap &data, Filters_map const &, Movers_map const &, Pose const &) | protocols::forge::remodel::RemodelMover | virtual |
parse_state(SerializableState const &state) | protocols::moves::Mover | virtual |
Pose typedef | protocols::forge::remodel::RemodelMover | |
PoseCOP typedef | protocols::moves::Mover | |
process_continuous_design_string(Interval const &original_interval, String const &design_str, Original2Modified const &original2modified_interval_endpoints, TaskFactoryOP design_tf) | protocols::forge::remodel::RemodelMover | private |
process_insert_design_string(Interval const &original_interval, String const &design_str, Original2Modified const &original2modified_interval_endpoints, TaskFactoryOP design_tf) | protocols::forge::remodel::RemodelMover | private |
Real typedef | protocols::forge::remodel::RemodelMover | |
redesign_loop_neighborhood(bool const flag) | protocols::forge::remodel::RemodelMover | inline |
redesign_loop_neighborhood_ | protocols::forge::remodel::RemodelMover | private |
register_options() | protocols::moves::Mover | inlinestatic |
register_user_options() | protocols::forge::remodel::RemodelMover | private |
reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
remodel_data_ | protocols::forge::remodel::RemodelMover | private |
RemodelData typedef | protocols::forge::remodel::RemodelMover | |
RemodelMover() | protocols::forge::remodel::RemodelMover | |
RemodelMover(RemodelMover const &rval) | protocols::forge::remodel::RemodelMover | |
RemodelWorkingSet typedef | protocols::forge::remodel::RemodelMover | |
reset_status() | protocols::moves::Mover | |
save_state(SerializableState &state) | protocols::moves::Mover | virtual |
ScoreFunction typedef | protocols::forge::remodel::RemodelMover | |
ScoreFunctionOP typedef | protocols::forge::remodel::RemodelMover | |
set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inline |
set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
Size typedef | protocols::forge::remodel::RemodelMover | |
String typedef | protocols::forge::remodel::RemodelMover | |
Strings typedef | protocols::moves::Mover | |
Super typedef | protocols::forge::remodel::RemodelMover | private |
TagPtr typedef | protocols::forge::remodel::RemodelMover | |
TaskFactoryOP typedef | protocols::forge::remodel::RemodelMover | |
test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
type() const | protocols::moves::Mover | inline |
type(const std::string &type_in) | protocols::moves::Mover | inline |
VarLengthBuild typedef | protocols::forge::remodel::RemodelMover | |
VarLengthBuildOP typedef | protocols::forge::remodel::RemodelMover | |
vlb_ | protocols::forge::remodel::RemodelMover | private |
working_model_ | protocols::forge::remodel::RemodelMover | private |
~Mover() | protocols::moves::Mover | virtual |
~RemodelMover() | protocols::forge::remodel::RemodelMover | virtual |