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SnugDock.cc File Reference

Dock and antigen to an antibody while optimizing the rigid body orientation of the VH and VL chains and performing CDR loop minimization. More...

#include <protocols/antibody2/SnugDock.hh>
#include <protocols/antibody2/AntibodyInfo.hh>
#include <protocols/antibody2/CDRsMinPackMin.hh>
#include <protocols/antibody2/RefineOneCDRLoop.hh>
#include <protocols/docking/DockingProtocol.hh>
#include <protocols/docking/DockMCMCycle.hh>
#include <protocols/docking/DockTaskFactory.hh>
#include <protocols/moves/ChangeFoldTreeMover.hh>
#include <protocols/moves/MonteCarlo.hh>
#include <protocols/moves/MoverContainer.hh>
#include <protocols/moves/TrialMover.hh>
#include <protocols/simple_moves/RepackSidechainsMover.hh>
#include <protocols/simple_moves/SwitchResidueTypeSetMover.hh>
#include <core/chemical/ChemicalManager.fwd.hh>
#include <core/pose/Pose.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/types.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/run.OptionKeys.gen.hh>
#include <basic/options/keys/antibody.OptionKeys.gen.hh>
#include <basic/Tracer.hh>

Namespaces

 protocols
 The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
 
 protocols::antibody2
 

Constant Groups

 protocols
 The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
 
 protocols::antibody2
 

Functions

static basic::Tracer TR ("protocols.antibody2.SnugDock")
 
std::ostream & protocols::antibody2::operator<< (std::ostream &out, SnugDock const &)
 

Detailed Description

Dock and antigen to an antibody while optimizing the rigid body orientation of the VH and VL chains and performing CDR loop minimization.

Detailed:
Author
Jianqing Xu ( xubes.nosp@m.t@gm.nosp@m.ail.c.nosp@m.om )
Brian D. Weitzner ( brian.nosp@m..wei.nosp@m.tzner.nosp@m.@gma.nosp@m.il.co.nosp@m.m )

Function Documentation

static basic::Tracer TR ( "protocols.antibody2.SnugDock"  )
static