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Rosetta 3.5
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Rosetta 3.5
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This is the complete list of members for core::scoring::MinScoreScoreFunction, including all inherited members.
| _add_weights_from_file(std::string const &filename, bool patch=false) | core::scoring::ScoreFunction | |
| add_extra_method(ScoreType const &new_type, Real const new_weight, methods::EnergyMethod const &new_method) | core::scoring::ScoreFunction | |
| add_extra_method(std::map< ScoreType, Real > const &new_weights, methods::EnergyMethod const &new_method) | core::scoring::ScoreFunction | |
| add_weights_from_file(std::string const &filename) | core::scoring::ScoreFunction | |
| all_energies_begin() const | core::scoring::ScoreFunction | |
| all_energies_end() const | core::scoring::ScoreFunction | |
| all_methods() const | core::scoring::ScoreFunction | |
| AllMethods typedef | core::scoring::ScoreFunction | |
| AllMethodsIterator typedef | core::scoring::ScoreFunction | |
| any_intrares_energies() const | core::scoring::ScoreFunction | inlineprotected |
| any_lr_residue_pair_energy(pose::Pose const &pose, Size res1, Size res2) const | core::scoring::ScoreFunction | |
| apply_patch_from_file(std::string const &filename) | core::scoring::ScoreFunction | |
| are_they_neighbors(pose::Pose const &pose, Size const pos1, Size const pos2) const | core::scoring::ScoreFunction | |
| bump_check_backbone(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, EnergyMap &emap) const | core::scoring::ScoreFunction | |
| bump_check_full(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, EnergyMap &emap) const | core::scoring::ScoreFunction | |
| CD_1B_Methods typedef | core::scoring::ScoreFunction | |
| cd_1b_types() const | core::scoring::ScoreFunction | inline |
| cd_2b_begin() const | core::scoring::ScoreFunction | |
| cd_2b_end() const | core::scoring::ScoreFunction | |
| cd_2b_intrares_begin() const | core::scoring::ScoreFunction | |
| cd_2b_intrares_end() const | core::scoring::ScoreFunction | |
| CD_2B_Methods typedef | core::scoring::ScoreFunction | |
| cd_2b_types() const | core::scoring::ScoreFunction | inline |
| CD_LR_2B_MethodIterator typedef | core::scoring::ScoreFunction | |
| CD_LR_2B_Methods typedef | core::scoring::ScoreFunction | |
| cd_lr_2b_methods_begin() const | core::scoring::ScoreFunction | |
| cd_lr_2b_methods_end() const | core::scoring::ScoreFunction | |
| cd_lr_2b_types() const | core::scoring::ScoreFunction | inline |
| CI_1B_Methods typedef | core::scoring::ScoreFunction | |
| ci_1b_types() const | core::scoring::ScoreFunction | inline |
| ci_2b_begin() const | core::scoring::ScoreFunction | |
| ci_2b_end() const | core::scoring::ScoreFunction | |
| ci_2b_intrares_begin() const | core::scoring::ScoreFunction | |
| ci_2b_intrares_end() const | core::scoring::ScoreFunction | |
| CI_2B_Methods typedef | core::scoring::ScoreFunction | |
| ci_2b_types() const | core::scoring::ScoreFunction | inline |
| CI_LR_2B_MethodIterator typedef | core::scoring::ScoreFunction | |
| CI_LR_2B_Methods typedef | core::scoring::ScoreFunction | |
| ci_lr_2b_methods_begin() const | core::scoring::ScoreFunction | |
| ci_lr_2b_methods_end() const | core::scoring::ScoreFunction | |
| ci_lr_2b_types() const | core::scoring::ScoreFunction | inline |
| clone() const | core::scoring::MinScoreScoreFunction | virtual |
| energy_method_options() const | core::scoring::ScoreFunction | inline |
| eval_cd_1b(conformation::Residue const &rsd, pose::Pose const &pose, EnergyMap &emap) const | core::scoring::ScoreFunction | virtual |
| eval_cd_2b(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, EnergyMap &emap) const | core::scoring::ScoreFunction | virtual |
| eval_cd_2b_bb_bb(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, EnergyMap &emap) const | core::scoring::ScoreFunction | |
| eval_cd_2b_bb_sc(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, EnergyMap &emap) const | core::scoring::ScoreFunction | |
| eval_cd_2b_sc_sc(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, EnergyMap &emap) const | core::scoring::ScoreFunction | |
| eval_cd_intrares_energy(conformation::Residue const &rsd, pose::Pose const &pose, EnergyMap &emap) const | core::scoring::ScoreFunction | virtual |
| eval_ci_1b(conformation::Residue const &rsd, pose::Pose const &pose, EnergyMap &emap) const | core::scoring::ScoreFunction | |
| eval_ci_2b(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, EnergyMap &emap) const | core::scoring::ScoreFunction | |
| eval_ci_2b_bb_bb(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, EnergyMap &emap) const | core::scoring::ScoreFunction | |
| eval_ci_2b_bb_sc(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, EnergyMap &emap) const | core::scoring::ScoreFunction | |
| eval_ci_2b_sc_sc(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, EnergyMap &emap) const | core::scoring::ScoreFunction | |
| eval_ci_intrares_energy(conformation::Residue const &rsd, pose::Pose const &pose, EnergyMap &emap) const | core::scoring::ScoreFunction | |
| eval_dof_derivative(id::DOF_ID const &dof_id, id::TorsionID const &torsion_id, pose::Pose const &pose) const | core::scoring::ScoreFunction | |
| eval_intrares_energy(conformation::Residue const &rsd, pose::Pose const &pose, EnergyMap &emap) const | core::scoring::ScoreFunction | |
| eval_long_range_twobody_energies(pose::Pose &pose) const | core::scoring::ScoreFunction | virtual |
| eval_npd_atom_derivative(id::AtomID const &atom_id, pose::Pose const &pose, kinematics::DomainMap const &domain_map, Vector &F1, Vector &F2) const | core::scoring::ScoreFunction | virtual |
| eval_onebody_energies(pose::Pose &pose) const | core::scoring::ScoreFunction | virtual |
| eval_twobody_neighbor_energies(pose::Pose &pose) const | core::scoring::ScoreFunction | virtual |
| evaluate_rotamer_background_energies(conformation::RotamerSetBase const &set1, conformation::Residue const &residue2, pose::Pose const &pose, utility::vector1< core::PackerEnergy > &energy_vector) const | core::scoring::ScoreFunction | |
| evaluate_rotamer_intrares_energies(conformation::RotamerSetBase const &set, pose::Pose const &pose, utility::vector1< core::PackerEnergy > &energies) const | core::scoring::ScoreFunction | |
| evaluate_rotamer_intrares_energy_maps(conformation::RotamerSetBase const &set, pose::Pose const &pose, utility::vector1< EnergyMap > &emaps) const | core::scoring::ScoreFunction | |
| evaluate_rotamer_pair_energies(conformation::RotamerSetBase const &set1, conformation::RotamerSetBase const &set2, pose::Pose const &pose, ObjexxFCL::FArray2D< core::PackerEnergy > &energy_table) const | core::scoring::ScoreFunction | |
| finalize_after_derivatives(pose::Pose &pose) const | core::scoring::ScoreFunction | virtual |
| get_name() const | core::scoring::ScoreFunction | inline |
| get_nonzero_weighted_scoretypes() const | core::scoring::ScoreFunction | inline |
| get_sub_score(pose::Pose const &pose, utility::vector1< bool > const &residue_mask) const | core::scoring::ScoreFunction | |
| get_sub_score(pose::Pose const &pose, utility::vector1< bool > const &residue_mask, EnergyMap &emap) const | core::scoring::ScoreFunction | |
| get_sub_score(pose::Pose &pose, utility::vector1< bool > const &residue_mask) const | core::scoring::ScoreFunction | |
| get_sub_score(pose::Pose &pose, utility::vector1< bool > const &residue_mask, EnergyMap &emap) const | core::scoring::ScoreFunction | |
| get_sub_score_exclude_res(pose::Pose const &pose, utility::vector1< core::Size > const &exclude_list) const | core::scoring::ScoreFunction | |
| get_sub_score_exclude_res(pose::Pose const &pose, utility::vector1< core::Size > const &exclude_list, EnergyMap &emap) const | core::scoring::ScoreFunction | |
| get_sub_score_exclude_res(pose::Pose &pose, utility::vector1< core::Size > const &exclude_list) const | core::scoring::ScoreFunction | |
| get_sub_score_exclude_res(pose::Pose &pose, utility::vector1< core::Size > const &exclude_list, EnergyMap &emap) const | core::scoring::ScoreFunction | |
| get_weight(ScoreType const &t) const | core::scoring::ScoreFunction | |
| has_nonzero_weight(ScoreType const &t) const | core::scoring::ScoreFunction | inline |
| has_zero_weight(ScoreType const &t) const | core::scoring::ScoreFunction | inline |
| indicate_required_context_graphs(utility::vector1< bool > &context_graphs_required) const | core::scoring::ScoreFunction | |
| info() const | core::scoring::ScoreFunction | |
| initialize_from_file(std::string const &filename) | core::scoring::ScoreFunction | |
| long_range_energies_begin() const | core::scoring::ScoreFunction | |
| long_range_energies_end() const | core::scoring::ScoreFunction | |
| LR_2B_MethodIterator typedef | core::scoring::ScoreFunction | |
| LR_2B_Methods typedef | core::scoring::ScoreFunction | |
| max_atomic_interaction_cutoff() const | core::scoring::ScoreFunction | |
| merge(const ScoreFunction scorefxn_to_be_merged) | core::scoring::ScoreFunction | |
| min_score_ | core::scoring::MinScoreScoreFunction | private |
| MinScoreScoreFunction() | core::scoring::MinScoreScoreFunction | |
| MinScoreScoreFunction(MinScoreScoreFunction const &) | core::scoring::MinScoreScoreFunction | |
| MinScoreScoreFunction(ScoreFunction const &src, core::Real const ) | core::scoring::MinScoreScoreFunction | |
| MinScoreScoreFunction(ScoreFunctionOP src, core::Real const ) | core::scoring::MinScoreScoreFunction | |
| MinScoreScoreFunction(ScoreFunctionCOP src, core::Real const ) | core::scoring::MinScoreScoreFunction | |
| name(std::string const &weights_tag) | core::scoring::ScoreFunction | inline |
| operator()(pose::Pose &pose) const | core::scoring::MinScoreScoreFunction | virtual |
| operator=(MinScoreScoreFunction const &) | core::scoring::MinScoreScoreFunction | |
| core::scoring::ScoreFunction::operator=(ScoreFunction const &) | core::scoring::ScoreFunction | |
| operator[](ScoreType const &t) const | core::scoring::ScoreFunction | inline |
| parent typedef | core::scoring::MinScoreScoreFunction | |
| perturb_weights() | core::scoring::ScoreFunction | |
| prepare_rotamers_for_packing(pose::Pose const &pose, conformation::RotamerSetBase &set) const | core::scoring::ScoreFunction | |
| reinitialize_minnode_for_residue(MinimizationNode &min_node, conformation::Residue const &rsd, kinematics::MinimizerMapBase const &min_map, pose::Pose &pose) const | core::scoring::ScoreFunction | |
| reset() | core::scoring::ScoreFunction | |
| reset_energy_methods() | core::scoring::ScoreFunction | |
| score(pose::Pose &pose) const | core::scoring::ScoreFunction | virtual |
| score_types_by_method_type(methods::EnergyMethodType const &t) const | core::scoring::ScoreFunction | inline |
| ScoreFunction() | core::scoring::ScoreFunction | |
| ScoreFunction(ScoreFunction const &) | core::scoring::ScoreFunction | |
| serialize_weights() const | core::scoring::ScoreFunction | |
| set_energy_method_options(methods::EnergyMethodOptions const &energy_method_options_in) | core::scoring::ScoreFunction | |
| set_etable(std::string const &etable_name) | core::scoring::ScoreFunction | |
| set_method_weights(ScoreType const &t, utility::vector1< Real > const &wts) | core::scoring::ScoreFunction | |
| set_weight(ScoreType const &t, Real const &setting) | core::scoring::ScoreFunction | |
| setup_for_derivatives(pose::Pose &pose) const | core::scoring::ScoreFunction | virtual |
| setup_for_lr2benmeth_minimization_for_respair(conformation::Residue const &res1, conformation::Residue const &res2, methods::LongRangeTwoBodyEnergyCOP lr2benergy, MinimizationGraph &g, kinematics::MinimizerMapBase const &min_map, pose::Pose &p, bool const res_moving_wrt_eachother, bool accumulate_fixed_energies, ResidueNeighborConstIteratorOP rni, EnergyMap &fixed_energies, Real const edge_weight=1.0) const | core::scoring::ScoreFunction | |
| setup_for_minimizing(pose::Pose &pose, kinematics::MinimizerMapBase const &min_map) const | core::scoring::ScoreFunction | virtual |
| setup_for_minimizing_for_node(MinimizationNode &min_node, conformation::Residue const &rsd, kinematics::MinimizerMapBase const &min_map, pose::Pose &pose, bool accumulate_fixed_energies, EnergyMap &fixed_energies) const | core::scoring::ScoreFunction | virtual |
| setup_for_minimizing_sr2b_enmeths_for_minedge(conformation::Residue const &res1, conformation::Residue const &res2, MinimizationEdge &min_edge, kinematics::MinimizerMapBase const &min_map, pose::Pose &pose, bool const res_moving_wrt_eachother, bool accumulate_fixed_energies, EnergyEdge const *energy_edge, EnergyMap &fixed_energies, Real const edge_weight=1.0) const | core::scoring::ScoreFunction | |
| setup_for_packing(pose::Pose &pose, utility::vector1< bool > const &residues_repacking, utility::vector1< bool > const &residues_designing) const | core::scoring::ScoreFunction | |
| setup_for_scoring(pose::Pose &pose) const | core::scoring::ScoreFunction | |
| show(std::ostream &out) const | core::scoring::ScoreFunction | |
| show(std::ostream &out, pose::Pose &pose) const | core::scoring::ScoreFunction | |
| show(pose::Pose &pose) const | core::scoring::ScoreFunction | inline |
| show_line(std::ostream &out, pose::Pose const &pose) const | core::scoring::ScoreFunction | |
| show_line_headers(std::ostream &out) const | core::scoring::ScoreFunction | |
| show_pretty(std::ostream &out) const | core::scoring::ScoreFunction | |
| TWO_B_MethodIterator typedef | core::scoring::ScoreFunction | |
| TWO_B_Methods typedef | core::scoring::ScoreFunction | |
| update_residue_for_packing(pose::Pose &pose, Size resid) const | core::scoring::ScoreFunction | |
| weights() const | core::scoring::ScoreFunction | inline |
| whole_structure_types() const | core::scoring::ScoreFunction | inline |
| WS_MethodIterator typedef | core::scoring::ScoreFunction | |
| WS_Methods typedef | core::scoring::ScoreFunction | |
| ws_methods_begin() const | core::scoring::ScoreFunction | |
| ws_methods_end() const | core::scoring::ScoreFunction | |
| ~ScoreFunction() | core::scoring::ScoreFunction | virtual |
1.8.4