| apply(core::pose::Pose const &pose) const | protocols::simple_filters::RotamerBoltzmannWeight | virtual |
| protocols::filters::Filter::apply(core::io::serialization::PipeMap &pmap) | protocols::filters::Filter | virtual |
| clear() | protocols::filters::Filter | inlinevirtual |
| clone() const | protocols::simple_filters::RotamerBoltzmannWeight | virtual |
| compute(core::pose::Pose const &pose) const | protocols::simple_filters::RotamerBoltzmannWeight | |
| compute_Boltzmann_weight(core::pose::Pose const &pose, core::Size const resi) const | protocols::simple_filters::RotamerBoltzmannWeight | |
| compute_entropy_reduction() const | protocols::simple_filters::RotamerBoltzmannWeight | |
| compute_entropy_reduction(bool const cer) | protocols::simple_filters::RotamerBoltzmannWeight | |
| compute_entropy_reduction_ | protocols::simple_filters::RotamerBoltzmannWeight | private |
| compute_modified_ddG(core::pose::Pose const &pose, std::ostream &out) const | protocols::simple_filters::RotamerBoltzmannWeight | |
| ddG_threshold() const | protocols::simple_filters::RotamerBoltzmannWeight | |
| ddG_threshold(core::Real const ddG) | protocols::simple_filters::RotamerBoltzmannWeight | |
| ddG_threshold_ | protocols::simple_filters::RotamerBoltzmannWeight | private |
| ddGs_ | protocols::simple_filters::RotamerBoltzmannWeight | mutableprivate |
| energy_reduction_factor(core::Real const factor) | protocols::simple_filters::RotamerBoltzmannWeight | |
| energy_reduction_factor() const | protocols::simple_filters::RotamerBoltzmannWeight | |
| energy_reduction_factor_ | protocols::simple_filters::RotamerBoltzmannWeight | private |
| fast_calc_ | protocols::simple_filters::RotamerBoltzmannWeight | private |
| Filter() | protocols::filters::Filter | |
| Filter(std::string const &) | protocols::filters::Filter | |
| Filter(Filter const &) | protocols::filters::Filter | |
| first_pass_ala_scan(core::pose::Pose const &pose) const | protocols::simple_filters::RotamerBoltzmannWeight | |
| fresh_instance() const | protocols::simple_filters::RotamerBoltzmannWeight | virtual |
| get_type() const | protocols::filters::Filter | inlinevirtual |
| get_user_defined_name() const | protocols::filters::Filter | inline |
| interface_interaction_energy(core::pose::Pose const &pose, core::Size const res) const | protocols::simple_filters::RotamerBoltzmannWeight | |
| name() const | protocols::filters::Filter | inlinevirtual |
| no_modified_ddG_ | protocols::simple_filters::RotamerBoltzmannWeight | private |
| parent typedef | protocols::simple_filters::RotamerBoltzmannWeight | private |
| parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks) | protocols::simple_filters::RotamerBoltzmannWeight | virtual |
| parse_my_tag(utility::tag::TagPtr const tag, protocols::moves::DataMap &, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &) | protocols::simple_filters::RotamerBoltzmannWeight | virtual |
| rb_jump(core::Size const jump) | protocols::simple_filters::RotamerBoltzmannWeight | |
| rb_jump() const | protocols::simple_filters::RotamerBoltzmannWeight | |
| rb_jump_ | protocols::simple_filters::RotamerBoltzmannWeight | private |
| repack(bool const repack) | protocols::simple_filters::RotamerBoltzmannWeight | |
| repack() const | protocols::simple_filters::RotamerBoltzmannWeight | |
| repack_ | protocols::simple_filters::RotamerBoltzmannWeight | private |
| repacking_radius(core::Real const rad) | protocols::simple_filters::RotamerBoltzmannWeight | |
| repacking_radius() const | protocols::simple_filters::RotamerBoltzmannWeight | |
| repacking_radius_ | protocols::simple_filters::RotamerBoltzmannWeight | private |
| report(std::ostream &out, core::pose::Pose const &pose) const | protocols::simple_filters::RotamerBoltzmannWeight | virtual |
| report_sm(core::pose::Pose const &pose) const | protocols::simple_filters::RotamerBoltzmannWeight | virtual |
| rotamer_probabilities_ | protocols::simple_filters::RotamerBoltzmannWeight | mutableprivate |
| RotamerBoltzmannWeight() | protocols::simple_filters::RotamerBoltzmannWeight | |
| score(core::io::serialization::PipeMap &pmap) | protocols::filters::Filter | virtual |
| score(core::pose::Pose &pose) | protocols::filters::Filter | virtual |
| scorefxn(core::scoring::ScoreFunctionOP scorefxn) | protocols::simple_filters::RotamerBoltzmannWeight | |
| scorefxn() const | protocols::simple_filters::RotamerBoltzmannWeight | |
| scorefxn_ | protocols::simple_filters::RotamerBoltzmannWeight | private |
| scorename_ | protocols::filters::Filter | protected |
| set_user_defined_name(std::string const &name) | protocols::filters::Filter | inline |
| skip_ala_scan() const | protocols::simple_filters::RotamerBoltzmannWeight | |
| skip_ala_scan(bool const s) | protocols::simple_filters::RotamerBoltzmannWeight | |
| skip_ala_scan_ | protocols::simple_filters::RotamerBoltzmannWeight | private |
| sym_dof_names(std::string const dof_names) | protocols::simple_filters::RotamerBoltzmannWeight | |
| sym_dof_names() const | protocols::simple_filters::RotamerBoltzmannWeight | |
| sym_dof_names_ | protocols::simple_filters::RotamerBoltzmannWeight | private |
| target_residues_ | protocols::simple_filters::RotamerBoltzmannWeight | private |
| task_factory() const | protocols::simple_filters::RotamerBoltzmannWeight | |
| task_factory(core::pack::task::TaskFactoryOP task_factory) | protocols::simple_filters::RotamerBoltzmannWeight | |
| task_factory_ | protocols::simple_filters::RotamerBoltzmannWeight | private |
| temperature() const | protocols::simple_filters::RotamerBoltzmannWeight | |
| temperature(core::Real const temp) | protocols::simple_filters::RotamerBoltzmannWeight | |
| temperature_ | protocols::simple_filters::RotamerBoltzmannWeight | private |
| threshold_probabilities_per_residue_ | protocols::simple_filters::RotamerBoltzmannWeight | private |
| threshold_probability(core::chemical::AA const aa_type, core::Real const probability) | protocols::simple_filters::RotamerBoltzmannWeight | |
| threshold_probability(core::chemical::AA const aa_type) const | protocols::simple_filters::RotamerBoltzmannWeight | |
| type() const | protocols::simple_filters::RotamerBoltzmannWeight | |
| type(std::string const &s) | protocols::simple_filters::RotamerBoltzmannWeight | |
| type_ | protocols::simple_filters::RotamerBoltzmannWeight | private |
| unbound() const | protocols::simple_filters::RotamerBoltzmannWeight | |
| unbound(bool const u) | protocols::simple_filters::RotamerBoltzmannWeight | |
| unbound_ | protocols::simple_filters::RotamerBoltzmannWeight | private |
| write2pdb() const | protocols::simple_filters::RotamerBoltzmannWeight | |
| write2pdb(bool const write) | protocols::simple_filters::RotamerBoltzmannWeight | |
| write2pdb_ | protocols::simple_filters::RotamerBoltzmannWeight | private |
| write_to_pdb(core::Size const residue, std::string const residue_name, core::Real const boltzmann_weight) const | protocols::simple_filters::RotamerBoltzmannWeight | |
| ~Filter() | protocols::filters::Filter | virtual |
| ~RotamerBoltzmannWeight() | protocols::simple_filters::RotamerBoltzmannWeight | virtual |
1.8.4