| accept_according_to_dunbrack_ | protocols::simple_moves::sidechain_moves::SidechainMover | private |
| apply(core::pose::Pose &pose) | protocols::simple_moves::sidechain_moves::SidechainMover | virtual |
| protocols::canonical_sampling::ThermodynamicMover::apply(core::io::serialization::PipeMap &pmap) | protocols::moves::Mover | virtual |
| change_chi_without_replacing_residue() const | protocols::simple_moves::sidechain_moves::SidechainMover | |
| change_chi_without_replacing_residue_ | protocols::simple_moves::sidechain_moves::SidechainMover | private |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const | protocols::simple_moves::sidechain_moves::SidechainMover | virtual |
| create() | protocols::moves::Mover | virtual |
| dof_id_ranges(core::pose::Pose &pose) | protocols::simple_moves::sidechain_moves::SidechainMover | virtual |
| dunbrack_accept(numeric::random::RandomGenerator &Rand, core::conformation::Residue &res, utility::vector1< core::Real > const &previous_chi_angles, utility::vector1< core::Real > const &new_chi_angles) | protocols::simple_moves::sidechain_moves::SidechainMover | private |
| Filters_map typedef | protocols::moves::Mover | |
| finalize_simulation(core::pose::Pose &pose, protocols::canonical_sampling::MetropolisHastingsMover const &metropolis_hastings_mover) | protocols::canonical_sampling::ThermodynamicMover | virtual |
| fresh_instance() const | protocols::moves::Mover | virtual |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const | protocols::simple_moves::sidechain_moves::SidechainMover | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_type() const | protocols::moves::Mover | inline |
| idealize_sidechains(core::pose::Pose &pose) | protocols::simple_moves::sidechain_moves::SidechainMover | |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| init_task(core::pose::Pose const &pose) | protocols::simple_moves::sidechain_moves::SidechainMover | |
| initialize_simulation(core::pose::Pose &pose, protocols::canonical_sampling::MetropolisHastingsMover const &metropolis_hastings_mover, core::Size cycle) | protocols::simple_moves::sidechain_moves::SidechainMover | virtual |
| is_multi_trial() | protocols::canonical_sampling::ThermodynamicMover | virtual |
| last_chi_angles_ | protocols::simple_moves::sidechain_moves::SidechainMover | private |
| last_inner_score_temperature_delta() | protocols::canonical_sampling::ThermodynamicMover | virtual |
| last_mutation() const | protocols::simple_moves::sidechain_moves::SidechainMover | |
| last_mutation_ | protocols::simple_moves::sidechain_moves::SidechainMover | private |
| last_nchi() const | protocols::simple_moves::sidechain_moves::SidechainMover | |
| last_nchi_ | protocols::simple_moves::sidechain_moves::SidechainMover | private |
| last_pertrot_ | protocols::simple_moves::sidechain_moves::SidechainMover | private |
| last_proposal_density_ratio() | protocols::simple_moves::sidechain_moves::SidechainMover | virtual |
| last_proposal_density_ratio_ | protocols::simple_moves::sidechain_moves::SidechainMover | private |
| last_uniform() const | protocols::simple_moves::sidechain_moves::SidechainMover | |
| last_uniform_ | protocols::simple_moves::sidechain_moves::SidechainMover | private |
| last_withinrot() const | protocols::simple_moves::sidechain_moves::SidechainMover | |
| last_withinrot_ | protocols::simple_moves::sidechain_moves::SidechainMover | private |
| make_move(core::conformation::ResidueOP res) | protocols::simple_moves::sidechain_moves::SidechainMover | |
| make_rotwell_jump(utility::vector1< core::pack::dunbrack::DunbrackRotamerSampleData > const &rotamer_sample_data) | protocols::simple_moves::sidechain_moves::SidechainMover | private |
| metropolis_hastings_mover() | protocols::canonical_sampling::ThermodynamicMover | virtual |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| Mover(Mover const &other) | protocols::moves::Mover | |
| name() | protocols::moves::Mover | inlinestatic |
| next_resnum() const | protocols::simple_moves::sidechain_moves::SidechainMover | |
| next_resnum(core::Size resnum) | protocols::simple_moves::sidechain_moves::SidechainMover | |
| next_resnum_ | protocols::simple_moves::sidechain_moves::SidechainMover | private |
| observe_after_metropolis(protocols::canonical_sampling::MetropolisHastingsMover const &metropolis_hastings_mover) | protocols::canonical_sampling::ThermodynamicMover | virtual |
| operator=(Mover const &other) | protocols::moves::Mover | |
| packed_residues() const | protocols::simple_moves::sidechain_moves::SidechainMover | |
| packed_residues_ | protocols::simple_moves::sidechain_moves::SidechainMover | private |
| parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache) | protocols::moves::Mover | virtual |
| parse_my_tag(utility::tag::TagPtr const tag, protocols::moves::DataMap &data, protocols::filters::Filters_map const &filters, protocols::moves::Movers_map const &movers, core::pose::Pose const &pose) | protocols::simple_moves::sidechain_moves::SidechainMover | virtual |
| parse_state(SerializableState const &state) | protocols::moves::Mover | virtual |
| perturb_chi(numeric::random::RandomGenerator Rand, core::Real max_deviation, utility::vector1< core::Real > ¤t_chi, utility::vector1< core::Real > &new_chi) | protocols::simple_moves::sidechain_moves::SidechainMover | private |
| perturb_rot_within_well(utility::vector1< core::pack::dunbrack::DunbrackRotamerSampleData > const &rotamer_sample_data, utility::vector1< core::Real > const &previous_chi_angles) | protocols::simple_moves::sidechain_moves::SidechainMover | private |
| Pose typedef | protocols::moves::Mover | |
| pose_ | protocols::simple_moves::sidechain_moves::SidechainMover | private |
| PoseCOP typedef | protocols::moves::Mover | |
| preserve_detailed_balance() const | protocols::simple_moves::sidechain_moves::SidechainMover | virtual |
| preserve_detailed_balance_ | protocols::simple_moves::sidechain_moves::SidechainMover | private |
| preturb_rot_and_dunbrack_eval(core::conformation::ResidueOP input_residue) | protocols::simple_moves::sidechain_moves::SidechainMover | private |
| prob_random_pert_current() const | protocols::simple_moves::sidechain_moves::SidechainMover | |
| prob_random_pert_to_current_ | protocols::simple_moves::sidechain_moves::SidechainMover | private |
| prob_uniform() const | protocols::simple_moves::sidechain_moves::SidechainMover | |
| prob_uniform_ | protocols::simple_moves::sidechain_moves::SidechainMover | private |
| prob_withinrot() const | protocols::simple_moves::sidechain_moves::SidechainMover | |
| prob_withinrot_ | protocols::simple_moves::sidechain_moves::SidechainMover | private |
| proposal_density(core::conformation::Residue const &proposed_residue, core::Size const proposed_resnum, core::chemical::ResidueType const &initial_residue_type, utility::vector1< core::Real > const &initial_chi_angles) const | protocols::simple_moves::sidechain_moves::SidechainMover | |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| reset_status() | protocols::moves::Mover | |
| residue_packed() const | protocols::simple_moves::sidechain_moves::SidechainMover | |
| residue_packed_ | protocols::simple_moves::sidechain_moves::SidechainMover | private |
| rotamer_library() const | protocols::simple_moves::sidechain_moves::SidechainMover | |
| rotamer_library_ | protocols::simple_moves::sidechain_moves::SidechainMover | private |
| sample_rotwells_unif_ | protocols::simple_moves::sidechain_moves::SidechainMover | private |
| sampling_temperature() | protocols::simple_moves::sidechain_moves::SidechainMover | inline |
| sampling_temperature_ | protocols::simple_moves::sidechain_moves::SidechainMover | protected |
| save_state(SerializableState &state) | protocols::moves::Mover | virtual |
| scratch_ | protocols::simple_moves::sidechain_moves::SidechainMover | private |
| set_change_chi_without_replacing_residue(bool const change_chi_without_replacing_residue) | protocols::simple_moves::sidechain_moves::SidechainMover | |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inline |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_metropolis_hastings_mover(protocols::canonical_sampling::MetropolisHastingsMoverAP metropolis_hastings_mover) | protocols::canonical_sampling::ThermodynamicMover | virtual |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_preserve_detailed_balance(bool preserve_detailed_balance) | protocols::simple_moves::sidechain_moves::SidechainMover | virtual |
| set_prob_random_pert_current(core::Real prob_pert) | protocols::simple_moves::sidechain_moves::SidechainMover | |
| set_prob_uniform(core::Real prob_uniform) | protocols::simple_moves::sidechain_moves::SidechainMover | |
| set_prob_withinrot(core::Real prob_withinrot) | protocols::simple_moves::sidechain_moves::SidechainMover | |
| set_sampling_temperature(core::Real temp) | protocols::simple_moves::sidechain_moves::SidechainMover | inline |
| set_task(core::pack::task::PackerTaskCOP task) | protocols::simple_moves::sidechain_moves::SidechainMover | |
| set_task_factory(core::pack::task::TaskFactoryCOP task_factory) | protocols::simple_moves::sidechain_moves::SidechainMover | |
| SidechainMover() | protocols::simple_moves::sidechain_moves::SidechainMover | |
| SidechainMover(core::pack::dunbrack::RotamerLibrary const &rotamer_library) | protocols::simple_moves::sidechain_moves::SidechainMover | |
| SidechainMover(SidechainMover const &mover) | protocols::simple_moves::sidechain_moves::SidechainMover | |
| Strings typedef | protocols::moves::Mover | |
| TagPtr typedef | protocols::moves::Mover | |
| task() const | protocols::simple_moves::sidechain_moves::SidechainMover | |
| task_ | protocols::simple_moves::sidechain_moves::SidechainMover | private |
| task_factory() const | protocols::simple_moves::sidechain_moves::SidechainMover | |
| task_factory_ | protocols::simple_moves::sidechain_moves::SidechainMover | private |
| task_initialized() | protocols::simple_moves::sidechain_moves::SidechainMover | |
| task_initialized_ | protocols::simple_moves::sidechain_moves::SidechainMover | private |
| temperature0_ | protocols::simple_moves::sidechain_moves::SidechainMover | protected |
| test_move(core::pose::Pose &) | protocols::simple_moves::sidechain_moves::SidechainMover | virtual |
| ThermodynamicMover() | protocols::canonical_sampling::ThermodynamicMover | |
| torsion_id_ranges(core::pose::Pose &pose) | protocols::simple_moves::sidechain_moves::SidechainMover | virtual |
| type() const | protocols::moves::Mover | inline |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| update_type() | protocols::simple_moves::sidechain_moves::SidechainMover | |
| ~Mover() | protocols::moves::Mover | virtual |
| ~SidechainMover() | protocols::simple_moves::sidechain_moves::SidechainMover | |
| ~ThermodynamicMover() | protocols::canonical_sampling::ThermodynamicMover | virtual |
1.8.4