Rosetta 3.5
 All Classes Namespaces Files Functions Variables Typedefs Enumerations Enumerator Friends Macros Pages
Public Types | Public Member Functions | Private Attributes | List of all members
protocols::toolbox::KClusterData Class Reference

database of a K-style Clustering algorithm More...

#include <KCluster.hh>

Inheritance diagram for protocols::toolbox::KClusterData:
Inheritance graph
[legend]
Collaboration diagram for protocols::toolbox::KClusterData:
Collaboration graph
[legend]

Public Types

typedef ObjexxFCL::FArray1D_double FA1Dd
 
typedef ObjexxFCL::FArray2D_double FA2Dd
 
typedef ObjexxFCL::FArray2_double FA2d
 
typedef ObjexxFCL::FArray2P_double FA2Pd
 
typedef ObjexxFCL::FArray3P_double FA3Pd
 
typedef utility::vector1< string > TagList
 

Public Member Functions

virtual ~KClusterData ()
 Automatically generated virtual destructor for class deriving directly from ReferenceCount. More...
 
 KClusterData ()
 
void load_silent_files ()
 
void load_silent_file (string, Size)
 
Size get_ndata () const
 
Size get_natom () const
 
std::string get_tag (core::Size i)
 
std::string source_filename (core::Size i)
 
FA3Pd coords ()
 
void mark_tags (KClusterElementOP, string)
 
void save_all_in_one ()
 
void save_cluster_tree ()
 
Real dist_square (FA2d &, FA2d &)
 
Real dist_square (Size, Size)
 
void show_cluster_assignments ()
 

Private Attributes

protocols::toolbox::DecoySetEvaluation dataset_
 
Size ndata_
 
Size natom_
 
Size n_ca_atom_
 
Size nfile_
 
utility::vector1< TagListtags_
 
utility::vector1< TagListoriginal_tags_
 
utility::vector1< std::string > original_filenames_
 
utility::vector1< core::Sizermsd_ca_list_
 

Detailed Description

database of a K-style Clustering algorithm

Member Typedef Documentation

typedef ObjexxFCL::FArray1D_double protocols::toolbox::KClusterData::FA1Dd
typedef ObjexxFCL::FArray2_double protocols::toolbox::KClusterData::FA2d
typedef ObjexxFCL::FArray2D_double protocols::toolbox::KClusterData::FA2Dd
typedef ObjexxFCL::FArray2P_double protocols::toolbox::KClusterData::FA2Pd
typedef ObjexxFCL::FArray3P_double protocols::toolbox::KClusterData::FA3Pd

Constructor & Destructor Documentation

protocols::toolbox::KClusterData::~KClusterData ( )
virtual

Automatically generated virtual destructor for class deriving directly from ReferenceCount.

Auto-generated virtual destructor

protocols::toolbox::KClusterData::KClusterData ( )

Member Function Documentation

FA3Pd protocols::toolbox::KClusterData::coords ( )
inline
Real protocols::toolbox::KClusterData::dist_square ( FA2d conf1,
FA2d conf2 
)
Real protocols::toolbox::KClusterData::dist_square ( Size  ndx1,
Size  ndx2 
)
Size protocols::toolbox::KClusterData::get_natom ( ) const
inline
Size protocols::toolbox::KClusterData::get_ndata ( ) const
inline
std::string protocols::toolbox::KClusterData::get_tag ( core::Size  i)
inline
void protocols::toolbox::KClusterData::load_silent_file ( string  silent_file,
Size  nfile 
)
void protocols::toolbox::KClusterData::load_silent_files ( )
void protocols::toolbox::KClusterData::mark_tags ( KClusterElementOP  c,
string  t 
)

References tags_.

void protocols::toolbox::KClusterData::save_all_in_one ( )
void protocols::toolbox::KClusterData::save_cluster_tree ( )
void protocols::toolbox::KClusterData::show_cluster_assignments ( )

References tags_.

std::string protocols::toolbox::KClusterData::source_filename ( core::Size  i)
inline

Member Data Documentation

protocols::toolbox::DecoySetEvaluation protocols::toolbox::KClusterData::dataset_
private
Size protocols::toolbox::KClusterData::n_ca_atom_
private

Referenced by KClusterData(), and load_silent_file().

Size protocols::toolbox::KClusterData::natom_
private
Size protocols::toolbox::KClusterData::ndata_
private
Size protocols::toolbox::KClusterData::nfile_
private
utility::vector1< std::string > protocols::toolbox::KClusterData::original_filenames_
private

Referenced by load_silent_file().

utility::vector1< TagList > protocols::toolbox::KClusterData::original_tags_
private

Referenced by load_silent_file().

utility::vector1< core::Size > protocols::toolbox::KClusterData::rmsd_ca_list_
private

Referenced by KClusterData(), and load_silent_file().

utility::vector1< TagList > protocols::toolbox::KClusterData::tags_
private

The documentation for this class was generated from the following files: